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Microbiology Resource Announcements
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  • Home
  • Articles
    • Latest Articles
    • Archive
  • Types of Resources
    • Amplicon Sequence Collections
    • Culture Collections/Mutant Libraries
    • Databases and Software
    • Omics Data Sets
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Latest Articles

  • Complete Genome Sequences of Novel Bovine T4, rv5-Like, and Dhillonviruses Effective against <span class="named-content genus-species" id="named-content-1">Escherichia coli</span> O157
    Genome Sequences
    Complete Genome Sequences of Novel Bovine T4, rv5-Like, and Dhillonviruses Effective against Escherichia coli O157

    Enterohemorrhagic Escherichia coli (EHEC) isolates of serotype O157:H7 are serious foodborne zoonotic pathogens and prime targets for biocontrol using bacteriophages. We report on the complete genome sequences of 11 novel lytic bacteriophages, representing three viral genera, isolated from cattle in Hungary that target...

    Domonkos Sváb, Linda Falgenhauer, Trinad Chakraborty, István Tóth
    7 Jan 2021
  • 16S rRNA Gene Amplicon Sequencing of Gut Microbiota in Three Species of Deep-Sea Fish in Suruga Bay, Japan
    Amplicon Sequence Collections
    16S rRNA Gene Amplicon Sequencing of Gut Microbiota in Three Species of Deep-Sea Fish in Suruga Bay, Japan

    We report here 16S rRNA gene amplicon sequence analysis of the gut microbiota in three species of deep-sea fish collected from Suruga Bay, Japan. Of the three species, two were dominated by the phylum Proteobacteria (genus Photobacterium), while one was dominated by the phyla Spirochaetes (genus Brevinema) and Tenericutes (unclassified Mycoplasmataceae).

    Toshihide Iwatsuki, Takahiro Kanazawa, Takato Ogasawara, Kento Hosotani, Karen Tsuchiya, Shinichi Watanabe, Tomoko Suzuki, Ryota Moriuchi, Yu Kanesaki, Hideo Dohra
    7 Jan 2021
  • Draft Genome Sequences of Six <em>Vibrio</em> Strains Isolated from the Atlantic Intertidal Marine Sponge <span class="named-content genus-species" id="named-content-1">Ophlitaspongia papilla</span>
    Genome Sequences
    Draft Genome Sequences of Six Vibrio Strains Isolated from the Atlantic Intertidal Marine Sponge Ophlitaspongia papilla

    We report here the genome sequences of six Vibrio strains isolated from an Atlantic intertidal marine sponge, Ophlitaspongia papilla. Genome mining and comparative genomics will assist in deciphering the bioactive potential of the symbiotic microbes and molecular mechanisms of sponge-microbial symbioses.

    Anoop Alex, Vijayakumari Pratheepa, Joana Martins, Agostinho Antunes
    7 Jan 2021
  • Draft Genome Sequence of <span class="named-content genus-species" id="named-content-1">Pseudomonas saudiphocaensis</span> Strain AGROB56, Isolated from a Dairy Farm in New Zealand
    Genome Sequences
    Draft Genome Sequence of Pseudomonas saudiphocaensis Strain AGROB56, Isolated from a Dairy Farm in New Zealand

    Here, we report the draft genome sequence of a new Pseudomonas saudiphocaensis strain, AGROB56, with lipolytic potential, isolated from a sheep dairy farm in New Zealand. The genome is 3.61 Mbp, with a GC content of 61.1%, and the genome sequence was found closely related to Pseudomonas saudiphocaensis 20 BNT

    Tanushree B. Gupta, Alexis N. Risson, Ruy Jauregui, Paul Maclean, Gale Brightwell
    7 Jan 2021
  • Whole-Genome Shotgun Sequence of <span class="named-content genus-species" id="named-content-1">Bacillus mycoides</span> Strain U53, a Psychrotolerant Bacterium Isolated from the Sakhalin Region in Russia
    Genome Sequences
    Whole-Genome Shotgun Sequence of Bacillus mycoides Strain U53, a Psychrotolerant Bacterium Isolated from the Sakhalin Region in Russia

    The shotgun genome sequence of Bacillus mycoides strain U53, a psychrotolerant bacterium that was isolated from soil in Russia, is characterized. The bacterial genome is 5,710,017 bp long and is predicted to have 5,847 genes. The GC content is 35.4%.

    Ha My T. Phan, Marina L. Sidorenko, Po-Chun Tsai, Shir-Ly Huang
    7 Jan 2021
  • Complete Genome Sequence of <span class="named-content genus-species" id="named-content-1">Sphingobium barthaii</span> KK22, a High-Molecular-Weight Polycyclic Aromatic Hydrocarbon-Degrading Soil Bacterium
    Genome Sequences
    Complete Genome Sequence of Sphingobium barthaii KK22, a High-Molecular-Weight Polycyclic Aromatic Hydrocarbon-Degrading Soil Bacterium

    Sphingobium barthaii KK22T is a high-molecular-weight polycyclic aromatic hydrocarbon-degrading soil bacterium that has been investigated in biotransformation, microbial ecology, and DNA damage studies. The complete genome sequence of S. barthaii revealed four closed circular sequences,...

    Jiro F. Mori, Robert A. Kanaly
    7 Jan 2021
  • Genome Sequence of a Dengue Virus Serotype 2 Strain Identified during the 2019 Outbreak in Bangladesh
    Genome Sequences
    Genome Sequence of a Dengue Virus Serotype 2 Strain Identified during the 2019 Outbreak in Bangladesh

    A nearly complete genome sequence of a dengue virus serotype 2 strain detected in the serum of a patient in 2019 during the largest outbreak of dengue fever in Bangladesh is reported.

    Roly Malaker, Mohammad S. I. Sajib, Apurba R. Malaker, Hafizur Rahman, Yogesh Hooda, Md Hasanuzzaman, Samir K. Saha, Senjuti Saha
    7 Jan 2021
  • Coding-Complete Genome Sequence of a Yellow Fever Virus Isolated from a Baby Howler Monkey (<em>Alouatta caraya</em>) from São Paulo State, Brazil, in 2016
    Genome Sequences
    Coding-Complete Genome Sequence of a Yellow Fever Virus Isolated from a Baby Howler Monkey (Alouatta caraya) from São Paulo State, Brazil, in 2016

    We report a coding-complete sequence of a yellow fever virus, strain JabSPM02, containing the 3′ untranslated region and all coding regions. The virus was recovered from an infected howler monkey from a rural area in São Paulo State, Brazil. Our findings show that it belongs to the South America 1E genotype.

    Márcio Junio Lima Siconelli, Daniel Macedo de Melo Jorge, Luiza Antunes de Castro-Jorge, Benedito Antonio Lopes da Fonseca
    7 Jan 2021
  • Complete Genome Sequence of <span class="named-content genus-species" id="named-content-1">Streptococcus mitis</span> Strain Nm-65, Isolated from a Patient with Kawasaki Disease
    Genome Sequences
    Complete Genome Sequence of Streptococcus mitis Strain Nm-65, Isolated from a Patient with Kawasaki Disease

    Streptococcus mitis Nm-65 is a human commensal streptococcal strain of the mitis group that was isolated from the tooth surface of a patient with Kawasaki disease. The complete genome sequence of Nm-65 was obtained by means of hybrid assembly, using two next-generation sequencing data sets. The final assembly size was 2,085,837 bp, with 2,039 coding sequences.

    ...
    Atsushi Tabata, Hisashi Ohkuni, Yasuhiko Itoh, Yoshitaka Fukunaga, Toshifumi Tomoyasu, Hideaki Nagamune
    7 Jan 2021
  • Complete Genome Sequence of a Rhabdovirus Strain from <em>Culex</em> Mosquitos Collected in Southern Switzerland
    Genome Sequences
    Complete Genome Sequence of a Rhabdovirus Strain from Culex Mosquitos Collected in Southern Switzerland

    We report here the full-length genome sequence of a rhabdovirus strain detected in a pool of 21 Culex pipiens and Culex torrentium mosquitos collected in southern Switzerland. The genome has a length of 11,914 nucleotides and encodes five major putative open reading frames.

    Jakub Kubacki, Isabelle Hardmeier, Weihong Qi, Eleonora Flacio, Mauro Tonolla, Cornel Fraefel
    7 Jan 2021

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