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Microbiology Resource Announcements
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  • Home
  • Articles
    • Latest Articles
    • Archive
  • Types of Resources
    • Amplicon Sequence Collections
    • Culture Collections/Mutant Libraries
    • Databases and Software
    • Omics Data Sets
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Latest Articles

  • Bacterial Diversity Profiling around the Orca Seamount in the Bransfield Strait, Antarctica, Based on 16S rRNA Gene Amplicon Sequences
    Amplicon Sequence Collections
    Bacterial Diversity Profiling around the Orca Seamount in the Bransfield Strait, Antarctica, Based on 16S rRNA Gene Amplicon Sequences

    Hydrothermal vent activity is often associated with submarine volcanism. Here, we investigated the presence of microorganisms related to hydrothermal activity in the Orca seamount. Data profiling of the 16S rRNA gene amplicon sequences revealed a diversity pattern dominated mainly by the phyla Proteobacteria, Acidobacteria, Planctomycetes, and Bacteroidetes.

    Wilbert Serrano, Raul M. Olaechea, Luis Cerpa, Jose Herrera, Aldo Indacochea
    7 Jan 2021
  • Draft Genome Sequence of Terrestrial <em>Streptomyces</em> sp. Strain VITNK9, Isolated from Vellore, Tamil Nadu, India, Exhibiting Antagonistic Activity against Fish Pathogens
    Genome Sequences
    Draft Genome Sequence of Terrestrial Streptomyces sp. Strain VITNK9, Isolated from Vellore, Tamil Nadu, India, Exhibiting Antagonistic Activity against Fish Pathogens

    We report the draft genome sequence of Streptomyces sp. strain VITNK9, isolated from a soil sample collected in Vellore district (12.9165°N, 79.1325°E), Tamil Nadu, India, with an assembly size of 7,920,076 bp and 72.7% GC content.

    Subhasish Saha, Nabila Mohammad Ishaque, Ilia Burgsdorf, Markéta Macho, Daniela Ewe, Laura Steindler, Pavel Hrouzek, Krishnan Kannabiran, Kumar Saurav
    7 Jan 2021
  • Complete Genome Sequence of <span class="named-content genus-species" id="named-content-1">Mycobacterium orygis</span> Strain 51145
    Genome Sequences
    Complete Genome Sequence of Mycobacterium orygis Strain 51145

    We report the complete 4,352,172-bp genome sequence of Mycobacterium orygis strain 51145 assembled into a single circular chromosome. Comparative genomic analyses with other lineages of the Mycobacterium tuberculosis complex can provide insights into the biology, evolution, and epidemiology of this...

    Syed Beenish Rufai, Fiona McIntosh, Indira Poojary, Shubhada Chothe, Aswathy Sebastian, Istvan Albert, Craig Praul, Manigandan Venkatesan, Gibarni Mahata, Hindol Maity, Premanshu Dandapat, Joy Sarojini Michael, Robab Katani, Vivek Kapur, Marcel A. Behr
    7 Jan 2021
  • Near-Complete Sequence of a Highly Divergent Reovirus Genome Recovered from <span class="named-content genus-species" id="named-content-1">Callinectes sapidus</span>
    Genome Sequences
    Near-Complete Sequence of a Highly Divergent Reovirus Genome Recovered from Callinectes sapidus

    This report describes the sequence of a reovirus genome, discovered in Callinectes sapidus in Brazil. The genome sequence of CsRV2 consists of 12 segments that encode 13 putative proteins. The predicted RNA-dependent RNA polymerase is highly similar to that of Eriocheir sinensis reovirus 905,...

    Mingli Zhao, Emily M. Flowers, Eric J. Schott
    7 Jan 2021
  • Closed Genome and Plasmid Sequences of <span class="named-content genus-species" id="named-content-1">Legionella pneumophila</span> AW-13-4, Isolated from a Hot Water Loop System of a Large Occupational Building
    Genome Sequences
    Closed Genome and Plasmid Sequences of Legionella pneumophila AW-13-4, Isolated from a Hot Water Loop System of a Large Occupational Building

    Unused water in unoccupied buildings can become stagnant, with reductions in temperature and levels of disinfectant resulting in increased microbial growth. We report the closed and complete genome and plasmid of Legionella pneumophila strain AW-13-4 (serogroup 1), which was isolated from a hot water loop system of a large building.

    Vicente Gomez-Alvarez, Laura Boczek, Ian Raffenberg, Randy P. Revetta
    7 Jan 2021
  • Coding-Complete Genome Sequence of <em>Avian orthoavulavirus 16</em>, Isolated from Emperor Goose (<span class="named-content genus-species" id="named-content-1">Anser canagicus</span>) Feces, Alaska, USA
    Genome Sequences
    Coding-Complete Genome Sequence of Avian orthoavulavirus 16, Isolated from Emperor Goose (Anser canagicus) Feces, Alaska, USA

    We sequenced the coding-complete genome of an avian orthoavulavirus serotype 16 (AOAV-16) isolate recovered from emperor goose (Anser canagicus) feces collected in Alaska. The detection of AOAV-16 in North America and genomic sequencing of the resultant isolate confirms that the geographic distribution of this virus extends beyond Asia.

    Andrew B. Reeves, Mary Lea Killian, Michael E. Tanner, Benjamin J. Lagassé, Andrew M. Ramey, David E. Stallknecht, Rebecca L. Poulson
    7 Jan 2021
  • Coding-Complete Genome Sequences of Six Influenza Type A Strains Circulating in Lithuania in the 2009–2010 Epidemic Season
    Genome Sequences
    Coding-Complete Genome Sequences of Six Influenza Type A Strains Circulating in Lithuania in the 2009–2010 Epidemic Season

    Here, we report the coding-complete genome sequences of six influenza A(H1N1) strains that were detected in Vilnius, Lithuania, among patients exhibiting influenza-like symptoms during the 2009–2010 epidemic season, in a national influenza surveillance. Several mutations were found in genes encoding hemagglutinin and neuraminidase, in comparison with the A/California/07/2009 reference strain (GenBank accession numbers...

    Lukasz Rabalski, Boguslaw Szewczyk, Kęstutis Zagminas, Algirdas Griskevicius, Krzysztof Lepek
    7 Jan 2021
  • Draft Genome Sequence of <em>Streptomyces</em> sp. Isolate H28 from the Meycauayan River, Philippines
    Genome Sequences
    Draft Genome Sequence of Streptomyces sp. Isolate H28 from the Meycauayan River, Philippines

    In this paper, we report the draft genome sequence of Streptomyces sp. isolate H28, isolated from the sediments of Meycauayan River, Philippines. This species exhibits production of melanin as well as the ability to utilize and degrade both high-density polyethylene (HDPE) and low-density polyethylene (LDPE).

    Aroin B. Verdera, Andrew D. Montecillo, Marie Christine M. Obusan
    7 Jan 2021
  • Genomic Sequences and Analysis of Five SARS-CoV-2 Variants Obtained from Patients in Lambayeque, Peru
    Genome Sequences
    Genomic Sequences and Analysis of Five SARS-CoV-2 Variants Obtained from Patients in Lambayeque, Peru

    Here, we report the genomic sequences of five severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strains obtained from nasopharyngeal samples from five tested COVID-19-infected patients from the Lambayeque region in Peru during early April 2020.

    Franklin Rómulo Aguilar-Gamboa, Luis Alberto Salcedo-Mejía, Luis Miguel Serquén-López, Marco Enrique Mechan-Llontop, Percy Omar Tullume-Vergara, Juan José Bonifacio-Briceño, Ramsés Salas-Asencios, Heber Silva Díaz, Juan P. Cárdenas
    7 Jan 2021
  • Novel Recombinant Foot-and-Mouth Disease Virus Circulating in Vietnam
    Genome Sequences
    Novel Recombinant Foot-and-Mouth Disease Virus Circulating in Vietnam

    We report the genome sequences of 12 recombinant foot-and-mouth disease virus isolates from Vietnam. The recombinant strain has a capsid region from an A/Sea-97 strain and a nonstructural segment from an O/ME-SA/PanAsia strain. The isolates were obtained from two outbreak samples collected in June 2017 and 10 subclinical samples collected between 2017 and 2019.

    Miranda R. Bertram, Barbara Brito, Rachel M. Palinski, Ian H. Fish, Steven J. Pauszek, Ethan J. Hartwig, George R. Smoliga, Le T. Vu, Bui H. Hoang, Nguyen T. Phuong, Vo V. Hung, Pham P. Vu, Nguyen K. Dung, Nguyen N. Tien, Pham V. Dong, Do H. Dung, Jonathan Arzt
    7 Jan 2021

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