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Microbiology Resource Announcements
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  • Home
  • Articles
    • Latest Articles
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  • Types of Resources
    • Amplicon Sequence Collections
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Latest Articles

  • Complete Genome Sequence of <em>Sandaracinobacter</em> sp. Strain M6, Isolated from a Rocky Mountain in China
    Genome Sequences
    Complete Genome Sequence of Sandaracinobacter sp. Strain M6, Isolated from a Rocky Mountain in China

    We report the complete genome sequence of Sandaracinobacter sp. strain M6 obtained by Oxford Nanopore and Illumina sequencing. The approximately 3.4 Mb genome sequence with a GC content of 67.65% provides essential data for future taxonomic studies and information for further investigating the metabolic characteristics of aerobic anoxygenic phototrophs.

    Ying Tang, Jun Huang, Cuiyang Zhang, Shiyu Bi, Zhaohui Guo, Qingshu Liu, Ping Lei
    7 Jan 2021
  • Mutation Profile of SARS-CoV-2 Genome Sequences Originating from Eight Israeli Patient Isolates
    Genome Sequences
    Mutation Profile of SARS-CoV-2 Genome Sequences Originating from Eight Israeli Patient Isolates

    We report the genome sequences and the identification of genetic variations in eight clinical samples of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Samples were collected from nasopharyngeal swabs of symptomatic and asymptomatic individuals from five care homes for elderly and infirm persons in Israel. The sequences obtained are valuable, as they carry a newly reported nonsynonymous substitution located within the...

    Galia Zaide, Inbar Cohen-Gihon, Ofir Israeli, Dana Stein, Ohad Shifman, Shay Weiss, Irit Simon, Orly Laskar, Adi Beth-Din, Anat Zvi
    7 Jan 2021
  • Genome Sequences of Two GH Clade SARS-CoV-2 Strains Isolated from Patients with COVID-19 in South Korea
    Genome Sequences
    Genome Sequences of Two GH Clade SARS-CoV-2 Strains Isolated from Patients with COVID-19 in South Korea

    We report the genome sequences of two GH clade severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strains isolated from nasopharyngeal swabs from patients with coronavirus disease 2019 (COVID-19) in South Korea. These strains had two mutations in the untranslated regions and seven nonsynonymous substitutions in open reading frames, compared with Wuhan/Hu-1/2019, showing 99.96% sequence identity.

    Minwoo Kim, Youn-Jung Lee, Jae Sun Yoon, Jin Young Ahn, Jung Ho Kim, Jun Yong Choi, Jong-Won Oh
    7 Jan 2021
  • Complete Genome Sequence of <em>Streptomyces</em> Phage Spernnie
    Genome Sequences
    Complete Genome Sequence of Streptomyces Phage Spernnie

    Streptomyces spp. are Gram-positive soil bacteria that have been reported in some cases to cause acute and chronic infections, including mycetomas, pneumonia, and septicemia. Here, we present Streptomyces sp. strain Mg1 phage Spernnie. Spernnie is a temperate siphophage containing 89 predicted coding genes in a 50,834-bp genome sequence.

    Nathaniel Tate, Loraine Melbern, James Clark, Isla Hernandez, Mei Liu, Ben Burrowes
    7 Jan 2021
  • Complete Genome Sequence of <em>Streptomyces</em> Siphophage Sycamore
    Genome Sequences
    Complete Genome Sequence of Streptomyces Siphophage Sycamore

    Streptomyces sp. strain Mg1 is a competitive soil-dwelling bacterium that secretes antibiotics that inhibit growth of Bacillus subtilis. Here, we present the genome sequence of Sycamore, a 44,694-bp Streptomyces sp. Mg1 siphophage with 66 predicted protein-coding genes, that is similar to phage genome sequences in the Lomovskayavirus genus...

    Xing-Han Zhang, Alejandra Marquez, James Clark, Isla Hernandez, Madeline Rivera, Mei Liu, Ben Burrowes
    7 Jan 2021
  • Metagenomic Exploration of <em>Atelerix albiventris</em> Gut Microbiome
    Omics Data Sets
    Metagenomic Exploration of Atelerix albiventris Gut Microbiome

    Here, we report the metagenomic analysis of the gut of Atelerix albiventris, an animal typically kept as a pet in Kazakhstan. In this case, shotgun metagenomic sequencing of the RNA and DNA viral community was performed.

    Makhabbat Amanbayeva, Elmira Anarkulova, Andrey Bogoyavlenskiy, Madina Alexyuk, Anar Imangazy, Vladimir Berezin
    7 Jan 2021
  • Complete Genome Sequence of <em>Streptomyces</em> Phage Sentinel
    Genome Sequences
    Complete Genome Sequence of Streptomyces Phage Sentinel

    The Streptomyces genus produces over two-thirds of clinically useful, natural antibiotics. Here, we describe the isolation and genome annotation of siphophage Sentinel, which utilizes Streptomyces sp. strain Mg1 as a host. It has a 50,272-bp genome and 83 protein-coding genes and shows similarity to other Streptomyces phages in the Arequatrovirus genus.

    Andrew Talcott, Russell Moreland, Jolene Ramsey, James Clark, Isla Hernandez, Mei Liu, Ben Burrowes
    7 Jan 2021
  • Complete Genome Sequence of <em>Streptomyces</em> Phage Shaeky
    Genome Sequences
    Complete Genome Sequence of Streptomyces Phage Shaeky

    Here, we present the genome of siphophage Shaeky, infecting the Gram-positive bacterium Streptomyces sp. strain Mg1. Shaeky has very low sequence identity to other phages, with phage phiC31 being the most closely related in the NCBI database. The Shaeky genome is 45,617 bp with 77 protein-coding genes and 16 tRNAs.

    Shae Shodrock, Tyler Higbee, James Clark, Isla Hernandez, Mei Liu, Ben Burrowes
    7 Jan 2021
  • Complete Genome Sequence of <em>Streptomyces</em> Siphophage Sitrop
    Genome Sequences
    Complete Genome Sequence of Streptomyces Siphophage Sitrop

    Streptomyces sp. strain Mg1 is a Gram-positive soil bacterium capable of causing cell lysis and degradation of Bacillus subtilis colonies. Here, we report the 48,481-bp genome of Streptomyces sp. Mg1 siphophage Sitrop. With 77 predicted protein-coding genes and one tRNA, Sitrop shares 77% nucleotide sequence identity with the Streptomyces...

    Victor Portillo, Haydee Diaz, James Clark, Isla Hernandez, Mei Liu, Ben Burrowes
    7 Jan 2021
  • Complete Genome Sequence of <em>Streptomyces</em> Phage Shady
    Genome Sequences
    Complete Genome Sequence of Streptomyces Phage Shady

    Streptomyces spp. are saprophytic soil bacteria that produce secondary metabolites with therapeutic potential. This announcement describes the isolation and genome annotation of Streptomyces sp. strain Mg1 siphophage Shady. Learning more about Shady’s novel 45-kb genome, containing 76 predicted protein-coding genes, could be industrially advantageous when using streptomycetes for their products.

    Carlos Ortega, Isla Hernandez, James Clark, Mei Liu, Ben Burrowes
    7 Jan 2021

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