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Microbiology Resource Announcements
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Advanced Search

  • Home
  • Articles
    • Latest Articles
    • Archive
  • Types of Resources
    • Amplicon Sequence Collections
    • Culture Collections/Mutant Libraries
    • Databases and Software
    • Omics Data Sets
    • Other Genetic Resources
    • Genome Sequences
  • For Authors
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Latest Articles

  • Genome Sequence of a <em>Minacovirus</em> Strain from a Farmed Mink in The Netherlands
    Genome Sequences
    Genome Sequence of a Minacovirus Strain from a Farmed Mink in The Netherlands

    We report the genome sequence of a Minacovirus strain identified from a fecal sample from a farmed mink (Neovison vison) in The Netherlands that was tested negative for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) using real-time PCR (RT-PCR). The viral genome sequence was obtained using agnostic deep sequencing.

    Kirsty T. T. Kwok, Myrna M. T. de Rooij, Felisita F. Sinartio, Lidwien A. M. Smit, Marion P. G. Koopmans, My V. T. Phan
    25 Feb 2021
  • Genome Sequence of <em>Streptomyces</em> sp. Strain HB-N217, Isolated from the Marine Sponge <em>Forcepia</em> sp.
    Genome Sequences
    Genome Sequence of Streptomyces sp. Strain HB-N217, Isolated from the Marine Sponge Forcepia sp.

    The genome sequence of the Forcepia sponge-derived bacterium Streptomyces sp. strain HB-N217 was determined, with approximately 8.25 Mbp and a G+C content of 72.1%. Thirty biosynthetic gene clusters that bear the capability to produce secondary metabolites were predicted. The results will aid marine natural product chemistry and sponge-microbe association studies.

    René K. M. Xavier, Dongbo Xu, Peter J. McCarthy, Shengming Yang, Guojun Wang
    25 Feb 2021
  • Draft Genome Sequence of a Novel <em>Mycoplasma</em> Species Identified from the Respiratory Tract of an Alaska Moose (<em>Alces alces gigas</em>)
    Genome Sequences
    Draft Genome Sequence of a Novel Mycoplasma Species Identified from the Respiratory Tract of an Alaska Moose (Alces alces gigas)

    The mycoplasmas represent a large and diverse group of bacteria, many of which are pathogens of humans and animals. Here, we describe a draft genome sequence of a novel Mycoplasma species. This novel Mycoplasma species has potential to cause false-positive PCR results for Mycoplasma ovipneumoniae, a respiratory-associated pathogen of ruminants.

    ...
    David R. Herndon, Kimberlee B. Beckmen, Margaret A. Highland
    25 Feb 2021
  • Complete Genome Sequence of <span class="named-content genus-species" id="named-content-1">Escherichia coli</span> Strain FEX669, a ColV Plasmid-Containing Isolate from Retail Chicken Meat
    Genome Sequences
    Complete Genome Sequence of Escherichia coli Strain FEX669, a ColV Plasmid-Containing Isolate from Retail Chicken Meat

    Escherichia coli strain FEX669 was isolated from retail ground chicken and shown to contain the extraintestinal pathogenic E. coli (ExPEC) virulence genes sfaD/focC and iutA. Because this presumptive ExPEC strain was isolated from a retail food item and it was a weak biofilm former...

    Jacob R. Elder, Yanhong Liu, Siddhartha Kanrar, Andrew Gehring, Aixia Xu, Christopher H. Sommers, Brian D. Johnston, James R. Johnson
    25 Feb 2021
  • High-Throughput Sequencing Survey of Sunflower Soil
    Amplicon Sequence Collections
    High-Throughput Sequencing Survey of Sunflower Soil

    Plant rhizobiomes are responsible for major soil processes in the immediate plant environment, but our knowledge of the linkage between below-ground microbiota diversity and plant health is limited. We studied the bacterial and archaeal communities of sunflower rhizosphere organisms by comparing the composition of these communities in bulk soil at three farms in the North West province of South Africa. We evaluated and described a...

    Olubukola Oluranti Babalola, Blessing Chidinma Nwachukwu, Ayansina Segun Ayangbenro
    25 Feb 2021
  • Draft Genome Sequence of Invasive <span class="named-content genus-species" id="named-content-1">Salmonella enterica</span> Serovar Cannstatt Harboring <em>mcr-1</em>.<em>1</em>, Isolated from a Fatal Sepsis Case
    Genome Sequences
    Draft Genome Sequence of Invasive Salmonella enterica Serovar Cannstatt Harboring mcr-1.1, Isolated from a Fatal Sepsis Case

    Here, we report the whole-genome sequence of multidrug-resistant Salmonella enterica serovar Cannstatt harboring mcr-1.1, isolated from a fatal sepsis case. Genomic analysis revealed that the isolate was sequence type 2390 carrying mcr-1.1, blaCTX-M-14, aac(3)IId, aac(6′)Iaa, floR, qnrS1, ...

    Wantana Paveenkittiporn, Watcharaporn Kamjumphol, Anusak Kerdsin
    25 Feb 2021
  • Complete Genome Sequence of <span class="named-content genus-species" id="named-content-1">Campylobacter hepaticus</span> USA52, Associated with Chicken Spotty Liver Disease
    Genome Sequences
    Complete Genome Sequence of Campylobacter hepaticus USA52, Associated with Chicken Spotty Liver Disease

    Campylobacter hepaticus was recently identified as the etiological agent of chicken spotty liver disease. Here, we report the complete genome sequence of C. hepaticus strain USA52 from the United States. The genome comprises a chromosome of 1,509,100 bp with an average GC content of 28.02%.

    Zuowei Wu, Orhan Sahin, Qijing Zhang
    25 Feb 2021
  • Complete Genome Sequence of <em>Paenibacillus</em> sp. Strain 37, a Plant Growth-Promoting Bacterium Isolated from the Rhizosphere of <span class="named-content genus-species" id="named-content-1">Abies nordmanniana</span> (Nordmann Fir)
    Genome Sequences
    Complete Genome Sequence of Paenibacillus sp. Strain 37, a Plant Growth-Promoting Bacterium Isolated from the Rhizosphere of Abies nordmanniana (Nordmann Fir)

    We report the complete genome sequence of Paenibacillus sp. strain 37, a plant growth-promoting bacterium (PGPB) isolated from the rhizosphere of Abies nordmanniana (Stev.) Spach; it contains a single chromosome of 7.08 Mbp and one plasmid of 54.33 kbp, including 6,445 protein-coding genes, 107 tRNAs, and 13 rRNA loci.

    Adriana M. Garcia-Lemos, Rosanna C. Hennessy, Tue K. Nielsen, Lars H. Hansen, Mette H. Nicolaisen
    25 Feb 2021
  • Metagenome Assembly and Metagenome-Assembled Genome Sequences from the Rhizosphere of Maize Plants in Mafikeng, South Africa
    Omics Data Sets
    Metagenome Assembly and Metagenome-Assembled Genome Sequences from the Rhizosphere of Maize Plants in Mafikeng, South Africa

    The rhizosphere microbiome plays an essential role in enhancing the growth of plants, raising the need for comprehension of their metabolic abilities. Here, we investigated rhizospheric and bulk soils of maize plants in Mafikeng, South Africa. Metagenome-assembled genomes containing plant growth-promoting genes were reconstructed.

    Olubukola O. Babalola, Rebaona R. Molefe, Adenike E. Amoo
    25 Feb 2021
  • In-Frame 12-Nucleotide Deletion within Open Reading Frame 3a in a SARS-CoV-2 Strain Isolated from a Patient Hospitalized with COVID-19
    Genome Sequences
    In-Frame 12-Nucleotide Deletion within Open Reading Frame 3a in a SARS-CoV-2 Strain Isolated from a Patient Hospitalized with COVID-19

    Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain UF-8, with an in-frame 12-nucleotide deletion within open reading frame 3a (ORF3a), was isolated from a 78-year-old COVID-19 patient in March 2020.

    John A. Lednicky, Kartikeya Cherabuddi, Massimiliano S. Tagliamonte, Maha A. Elbadry, Kuttichantran Subramaniam, Thomas B. Waltzek, J. Glenn Morris, Jr.
    25 Feb 2021

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