TABLE 1

Accession numbers and assembly metrics of 77 STEC whole-genome sequences

Escherichia coli
strain IDa
SerotypeChromosomal GenBank
accession no.
No. of
contigs
Chromosome
size (bp)
Associated plasmid size(s) (bp)
(GenBank accession no.)
2015C-3163O103:H2CP02721925,500,18994,104 (CP027220)
2015C-3101O111:H8CP02722135,313,27848,390 (CP027222), 72,543c (CP027223)
2015C-3108O111:H8CP02730735,364,44263,664c (CP027308), 93,724 (CP027309)
2014C-4135O113:H21CP02731024,949,048133,438 (CP027311)
2013C-3181O113:H21CP02731215,167,951No plasmids
2014C-3550O118:H16CP02731345,549,39559,928 (CP027314), 88,840 (CP027315), 179,514 (CP027316)
2015C-3107O121:H19CP02731725,388,26081,954 (CP027318)
2014C-3084O145:H28CP02731944,717,12378,854c (CP027320), 84,276c (CP027321), 706,680 (CP027322)
2013C-3033O146:H21CP02732325,426,201127,667 (CP027324)
2013C-4830O165:H25CP02732535,135,67574,671 (CP027326), 93,170 (CP027327)
2014C-3741O174:H8CP02732835,394,679c128,345c (CP027329), 102,897c (CP027330)
2013C-3277O26:H11CP02733145,438,69420,839c (CP027332), 46,866c (CP027333), 181,066c (CP027334)
2014C-3716O26:H11CP02733535,568,215c144,060c (CP027336), 62,870c (CP027337)
2013C-3925O5:H9PVMF000000006331,062,c 4,413,627,c 496,511c77,933,c 170,283,c 99,102c
2014C-3051O71:H11CP02733825,597,47592,644 (CP027339)
2015C-3121O91:H14CP02734025,366,577104,198c (CP027341)
2014C-4587OUND:H19CP02734225,040,163131,410 (CP027343)
2014C-3946O111:H8CP02734435,264,93822,197c (CP027345), 18,123c (CP027346)
2013C-4361O111:H8CP02734725,317,84670,613c (CP027348)
2014C-3655O121:H19CP02735125,442,53797,117c (CP027350)
2012C-4606O26:H11CP02735235,647,19520,881c (CP027353), 57,720c (CP027354)
2013C-4390O76:H19CP02748425,353,719147,394 (CP027485)
2013C-4991O80:H2CP02735545,367,25171,714c (CP027356), 131,463c (CP027357), 110,001 (CP027358)
2014C-4639O26:H11CP02736135,325,24654,873c (CP027359), 329,873 (CP027360)
95-3192O145:H28CP02736215,385,516No plasmids
88-3001O165:H25CP02736325,195,75374,659 (CP027364)
89-3156O174:H21CP02736625,065,883125,561 (CP027367)
03-3375O145:H25PVMG0000000045,199,239,c 40,965c30,901,c 83,963c
2014C-3307O178:H19CP02736834,965,987109,641 (CP027369), 176,149c (CP027370)
2015C-3905O181:H49CP02737124,901,620175,427c (CP027372)
2014C-4638O26:H11PVMH000000004261,681,c 2,112,842,c 3,317,231c88,223c
05-3629O8:H16CP02737334,904,15191,648 (CP027374), 118,863c (CP027375)
2013C-4404O91:H14CP02737645,009,82270,152 (CP027377), 113,102c (CP027378), 104,889 (CP027379)
2013C-3250O111:H8CP02738065,401,67224,547c (CP027381), 36,491c (CP027382), 73,784c (CP027383), 27,224c (CP027384), 118,259 (CP027385)
2014C-3057O26:H11CP02738725,645,98354,452c (CP027386)
2011C-4251O45:H2CP02738825,440,02668,062c (CP027389)
2015C-4944O26:H11CP02739025,802,74898,724 (CP027391)
97-3250O26:H11CP02759935,942,969120,604 (CP027600), 92,590c (CP027601)
2014C-3599O121:H19CP02743525,400,13883,611 (CP027436)
2012C-4221bO101:H6CP02743735,012,55774,904 (CP027438), 107,188 (CP027439)
2012C-4502O185:H28CP02744024,892,666173,714 (CP027441)
2013C-3252O69:H11CP02744235,636,73295,157 (CP027443), 91,399 (CP027444)
2013C-3492bO172:H25CP02744525,196,10574,269 (CP027446)
2014C-3075O36:H42CP02744725,168,620170,848 (CP027448)
2014C-3097bO181:H49CP02744935,077,22834,867 (CP027450), 173,649 (CP027451)
2014C-3338bO183:H18CP02745224,799,014159,611 (CP027453)
2014C-4423bO121:H19CP02745435,338,91573,262 (CP027455), 79,682 (CP027456)
88-3493bO137:H41CP02745725,001,754107,796 (CP027458)
90-3040bO172:H25CP02745925,253,71274,247 (CP027460)
95-3322bO22:H5CP02746115,095,223No plasmids
07-4299bO130:H11CP02746224,847,172125,059c (CP027463)
2013C-4248O186:H2CP02746485,243,827113,063 (CP027465), 10,950c (CP027466), 62,602 (CP027467), 97,439c (CP027468), 62,881c (CP027469), 80,206 (CP027470), 243,267 (CP027471)
2014C-3050bO118:H16CP02747225,671,59481,624c (CP027473)
89-3506bO126:H27CP02752035,178,386c160,231c (CP027521), 93,253c (CP027522)
2013C-3264bO103:H25CP02754425,486,407101,089 (CP027545)
2013C-4187bO71:H11CP02754625,509,93195,367 (CP027547)
2014C-3061bO156:H25CP02754825,303,93594,116 (CP027549)
2014C-4705bO112:H21CP02764025,329,029126,957 (CP027641)
2015C-4136CT1bO145:H34CP02755024,836,918162,810 (CP027551)
2015C-4498bO117:H8CP02755225,434,44267,055 (CP027553)
2013C-3513bO186:H11CP02755535,584,93970,129c (CP027554), 91,046c (CP027556)
2013C-3996O26:H11CP02757225,858,766c96,937 (CP027571)
2013C-4081bO111:H8CP02757345,411,94348,183 (CP027574), 95,952c (CP027575), 78,427 (CP027576)
2013C-4225bO103:H11CP02757725,646,44687,714c (CP027578)
2013C-4282bO77:H45CP02757935,030,04454,544c (CP027580), 118,822 (CP027581)
2013C-4538bO118:H16CP02758225,680,42888,339c (CP027583)
2014C-3003bO76:H19CP02767235,234,64088,529c (CP027673), 133,420 (CP027674)
2015C-3125bO145:H28CP02776335,471,13266,944c (CP027764), 66,388 (CP027765)
00-3076bO113:H21CP02758424,997,979160,576 (CP027585)
2012C-4196O145:H25PVZZ0000000053,847,435,c 1,375,699c26,290,c 111,344,c 65,126c
2012EL-2448bO91:H14CP02758615,272,286No plasmids
2013C-4974bO5:H9CP02758725,235,56058,109c (CP027588)
2014C-3011bO177:H25CP02759145,168,35075,065c (CP027589), 92,449c (CP027590), 17,880c (CP027592)
2013C-3304O71:H8CP02759345,309,950c14,119c (CP027594), 36,845c (CP027595), 87,855 (CP027596)
86-3153bO5:H9CP02759725,342,52874,505c (CP027598)
88-3510bO172:H25CP02767525,140,38665,738c (CP027676)
2013C-3342O117:H8CP02776625,489,45166,545 (CP027767)
  • a ID, identification.

  • b Strain for which an optical map was generated and used to confirm the sequence order.

  • c A linear sequence that could not be circularized due to unresolved or collapsed repeats.