TABLE 1

Summary of deep sequence results from foot-and-mouth disease serotype SAT1 and SAT2 strain samples from Kenya

Virus nameTotal no. of readsNo. of reads aligned to referenceAvg coverageAvg read length (nt)Sequence length (nt)Genome GC content (%)IndelsaVP1 accession no.GenBank accession no.SRA accession no.
SAT1/KEN/K14/2014354,492267,9034,671.5146.28,13153.5Insertions: 991, 8,046, 8,087, 8,088, 8,100; deletion: 160MH882578MN116689SAMN12167191
SAT1/KEN/K29/2014364,542224,6553,917.8146.88,13353.4Insertions: 991, 8,046, 8,087, 8,100; deletion: 160MH882580MN116690SAMN12167192
SAT1/KEN/K75/2016575,140533,8329,501.9145.58,14553.6Deletions: 159, 378, 544, 8,086MH882581MN116691SAMN12167193
SAT2/KEN/K137/2014594,734469,9557,669.9130.58,15153.1Deletions: 989, 8071MH882612MN116692SAMN12167194
  • a Positions of single-nucleotide indels compared to the reference genomes SAT1/TAN/22/2012 (SAT1) and SAT2/TAN/5/2012 (SAT2).