Table 1

Characteristics of eight Campylobacter coli strains

Strain nameGenBank accession no.BioProject no.SRA accession no.Genome coverage (×)Size (bp)No. of paired-end readsGC content (%)No. of contigsTotal no. of genesNo. of pseudogenesN50a (bp)No. of CDSsNo. of tRNAsNo. of rRNAsNo. of ncRNAs
PSU100RYEW00000000PRJNA508208SRR83212447411,842,0774,524,91230.961171,97161142,3341,9234233
PSU101RYEX00000000PRJNA510094SRR83212384091,838,1432,491,39730.96991,96059142,3341,9124233
PSU116RYFA00000000PRJNA510096SRR83212405581,841,9453,408,41630.961101,95759142,3341,9094233
PSU129RYEY00000000PRJNA510100SRR83212424821,677,6282,682,27631.33491,75840162,6801,7104233
PSU148RYVW00000000PRJNA510960SRR83603715781,823,2973,491,60731.131641,96286163,4201,9134243
PSU150RYEZ00000000PRJNA510101SRR83212465001,696,4832,812,05031.34831,78041162,6801,7324233
PSU165RYVV00000000PRJNA510961SRR83603725571,824,4563,369,41431.131711,95782163,4201,9113943
PSU172RYVX00000000PRJNA510962SRR83603736041,815,1013,634,44731.121271,94775142,0191,8984243
  • a The N50 value is the size of the shortest contig in the set of longest contigs that together cover at least 50% of the total genome size.