TABLE 1

Clinical and sequence data for 8 HPIV samples

Sample identifierGenBank accession no.SRR accession no.BioSample no.Genome GC content (%)SpeciesHPIV genotypeDate of original sample (mo/day/yr)Patient ageClinical symptom(s)cPassage no. (LLC-MK2)Cell culture CT valuedGenome length (nt)No. of mapped readsaTotal no. of readsAvg coverage (×)b
t146a290MH892403SRR8512262SAMN1083895737.2Human respirovirus 1HPIV-110/28/20139 mosRespiratory insufficiency316.715,675425,8541,927,1246,792
t146a291MH892404SRR8512263SAMN1083895837.2Human respirovirus 1HPIV-12/5/20132 yrsPierre Robin syndrome, cleft, respiratory insufficiency, tracheal cannula31915,42217,5982,024,742285
t146a292MH892405SRR8512264SAMN1083895938.4Human rubulavirus 2HPIV-212/15/20146 yrsILD, fever, and coughing312.315,68418,2631,828,911291
t146a293MH892406SRR8512265SAMN1083896038.7Human rubulavirus 2HPIV-24/2/201443 yrsIncreasing dyspnea, mucosal swelling, stridor, hoarseness31115,654264,3381,939,2234,222
t146a304MH892409SRR8512258SAMN1083896135.1Human respirovirus 3HPIV-38/1/201663 yrsRespiratory insufficiency310.615,3871,355,9914,099,10722,031
t146a305MH892410SRR8512259SAMN1083896235.2Human respirovirus 3HPIV-311/29/201314 yrsFever, mucus21415,409330,4692,589,2605,362
t146a296MH892407SRR8512260SAMN1083896336.3Human rubulavirus 4HPIV-411/8/20132 mosRespiratory insufficiency311.517,07946,1391,743,284675
t146a303MH892408SRR8512261SAMN1083896436.3Human rubulavirus 4HPIV-49/13/20138 mosTracheal cannula, URI313.417,03121,0812,598,198309
  • a Total number of quality-controlled reads mapped to final genome.

  • b Number of mapped reads times 250 divided by the length of the genome.

  • c ILD, interstitial lung disease; URI, upper respiratory infection.

  • d CT, threshold cycle.