TABLE 1

Summary of sequence details, drug resistance category, and lineage prediction for M. tuberculosis isolates

NCBI identification no.aAssembly accession no.Coverage depth (×)Read length (bp)GC content (%)N50 value (bp)No. of contigs >500Genome size (bp)Reference coverage (H37Rv) (%)No. of tRNAsNo. of rRNAsNo. of coding DNA sequencesLineage
NIRTX002_PDRSDOU000000007415165.5890,3811034,220,22999.34403,9971
NIRTX003_XDRSDOT0000000013115165.5898,6561074,375,55499.24534,1393
NIRTX004_XDRSDOS000000007910065.3557,1871364,233,50396.34524,1124
NIRTX005_XDRSDOR000000008015065.3760,7841404,262,45096.84544,1634
NIRTX006_XDRSDOQ00000000757665.5998,7401144,350,30298.64534,1192
NIRTX007_PDRSDOP00000000857665.5885,4111334,389,63199.54534,1451
NIRTX008_XDRSDOO00000000527665.67114,871894,300,32597.54514,0684
NIRTX009_XDRSDON00000000917665.59108,252914,379,99299.34534,1031
NIRTX010_PDRSDOM00000000697665.6172,6831274,329,14598.14534,1182
NIRTX011_XDRSDOL00000000607665.59115,334964,384,13699.44534,1131
NIRTX015_MDRSDOK000000001987665.59105,6901094,366,33099.04534,1131
NIRTX016_MDRSDOJ00000000717665.59104,750994,378,70699.34534,1231
NIRTX019_MDRSDOI00000000537665.5697,386984,370,42799.14534,1131
NIRTX022_MDRSDOH0000000017415165.6194,1821014,362,06998.94534,1364
NIRTX024_MDRSDOG000000006815165.56105,728924,383,76699.44534,1521
NIRTX025_MDRSDOF000000009215165.5425,6703234,380,81999.94984,2951
  • a MDR, multidrug-resistant TB; XDR, extensively drug-resistant TB; PDR, polydrug-resistant TB.