TABLEĀ 1

Whole-genome sequencing analyses of Salmonella Schwarzengrund isolates from clinical sources

Strain no.Source of isolateYr of isolationNo. of sequence readsN50 value (bp)No. of contigsAssembly size (bp)No. of CDSsG+C content (%)GenBank accession no.
MDH-1Blood20034,813,548255,417614,771,7714,84552.2QZET00000000
MDH-2Stool20033,729,214340,162564,775,1624,82852.2QZES00000000
MDH-3Stool20043,706,472112,3641004,684,0054,71752.1QZER00000000
MDH-4Stool20043,221,282167,201804,674,7364,71552.1QZEQ00000000
MDH-5Stool20044,754,358149,6281184,715,7844,76752.0QZEP00000000
MDH-6Stool20053,945,558138,8151014,774,6154,85452.2QZEO00000000
MDH-7Stool20054,316,76893,9691284,775,1444,85352.2QZEN00000000
MDH-8Stool20062,438,76291,7071585,117,6665,29151.6QZEM00000000
MDH-9Stool20073,737,93885,4081194,700,2384,78752.0QZEL00000000
MDH-10Stool20074,576,284102,5451064,693,9744,76652.0QZEK00000000
MDH-11Stool20084,129,638389,856434,722,6504,75252.2QZFD00000000
MDH-12Stool20094,399,374230,080544,706,2234,74552.1QZFE00000000
MDH-13Stool20104,764,064310,035494,739,7244,80652.1QZFF00000000
MDH-14Blood20113,208,474312,411514,767,5784,82952.2QZFG00000000
MDH-15Stool20112,124,138177,815854,766,4814,82952.2QZMP00000000
MDH-16Stool20121,892,712153,861674,800,6114,89452.0QZFH00000000
MDH-17Stool20121,532,044123,2531004,802,4674,86352.0QZFI00000000
MDH-18Gallbladder20133,806,53675,7861624,881,2775,00552.1QZFJ00000000
MDH-19Urine20132,291,46460,1322014,775,9234,87952.2QZFK00000000
MDH-20Subhepatic aspirate20132,936,93469,9881684,888,1465,02852.1QZFL00000000
MDH-21Stool20142,343,57257,2551954,688,2594,77352.1QZFM00000000
MDH-22Stool20142,023,56059,3031764,687,0164,76252.1QZMQ00000000
MDH-23Urine20141,872,51652,5551954,690,0854,77652.1QZFN00000000
MDH-24Stool20142,607,65653,1831974,682,1214,73052.2QZMR00000000
MDH-25Stool20152,424,54835,3683134,778,7304,86852.1QZFO00000000
MDH-26Urine20163,795,85636,6282744,807,8794,94452.0QZFP00000000
MDH-27Stool20162,566,75854,0672254,807,0424,89152.0QZFQ00000000