TABLE 1

Characteristics and accession numbers of genomes of the seven L. monocytogenes strains

CharacteristicaData for strain:
A3A7A10A13P12P17R6
Original strain nameCAL190404_14 aCAL150304_15 aCAL240504_38 aCAL090505_12CAL250805_7 aCAL191004_2cH180405_63 b
Serotype1/2a1/2a1/2a1/2a1/2a1/2a1/2a
MLSTST121ST31ST121ST31ST31ST3ST31
OriginAbbatoirAbbatoirAbbatoirAbbatoirProcessing plantProcessing plantRetail
GenBank accession no.RXOV00000000RXOS00000000RXOP00000000RXOR00000000RXOQ00000000RXOU00000000RXOT00000000
BioSample no.SAMN10584524SAMN10584527SAMN10584530SAMN10584528SAMN10584529SAMN10584525SAMN10584526
SRA accession no.SRX5164292SRX5164288SRX5164291SRX5164289SRX5164290SRX5164293SRX5164294
No. of reads for assembly4,504,6304,031,8846,169,0127,842,2567,799,4882,463,7624,564,458
Genome size (bp)3,105,8263,088,3623,111,5463,112,9683,053,2542,982,3293,056,197
No. of contigs37405460362748
N50 value (bp)465,517473,937482,166473,938584,633518,569584,755
G+C content (%)37.93837.937.823838.138.1
Total no. of genes3,2213,1743,2263,2243,1373,0263,149
Total no. of CDS3,1533,0403,1163,1543,0642,9583,097
No. of RNA genes68706870736870
No. of tRNAs56565656565656
No. of complete rRNAs (types)3, 1, 1 (5S, 16S, and 23S)3, 1 (5S and 23S)3, 1, 1 (5S, 16S, and 23S)4, 1 (5S and 23S)3, 1 (5S and 23S)3, 1, 1 (5S, 16S, and 23S)2, 1 (5S and 23S)
No. of ncRNAs4444444
No. of proteins3,1163,0403,1163,0752,9932,9263,011
CRISPR arrays3232222
  • a ST, sequence type; CDS, coding DNA sequences; ncRNAs, noncoding RNAs.