Draft Genome Sequences of Campylobacter fetus subsp. venerealis bv. venerealis Strain B6 and bv. intermedius Strain 642-21

Campylobacter fetus subsp. venerealis is an important venereal pathogen. We sequenced the genomes of Campylobacter fetus subsp. venerealis bv. venerealis strain B6 and bv. intermedius strain 642-21. The genetic variability of these Australian strains will facilitate the study of mechanisms of geographical adaptation of these pathogens that impact livestock.

wide. This species comprises two closely related subspecies, C. fetus subsp. fetus and C. fetus subsp. venerealis (1). The former is a generalist subspecies that colonizes the intestinal and genital tracts of multiple host including sheep, cattle, birds, and humans (2). The latter subspecies, C. fetus subsp. venerealis, is normally restricted to colonization of the genital tract in ruminants (3). C. fetus subsp. venerealis is the causative agent of bovine genital campylobacteriosis; asymptomatic in bulls, the disease is spread to female cattle and causes infertility and epidemic abortions (4). In a recent study, C. fetus subsp. venerealis was shown to contain unique lipopolysaccharide production and type IV secretion machineries as compared to C. fetus subsp. fetus (5). Targeted mutational inactivation demonstrated the role of lipopolysaccharide biosynthesis genes in the modulation of virulence and host range (5). The evolutionary interplay between microbial pathogens and their hosts is a continual process of adaptation, manifested by genomic variation of host adaptation factors, and by the gain and loss of genes via horizontal gene transfer. Thus, further understanding of local and regional adaptations of these pathogens is necessary to capture the genetic diversity of pathogens isolated from distinct geographic locations worldwide.
Here we report the sequencing of two C. fetus subsp. venerealis biovar genomes isolated in Australia, C. fetus subsp. venerealis bv. venerealis strain B6 and C. fetus subsp. venerealis bv. intermedius strain 642-21. Sequencing was performed on an Illumina/GAII platform and generated 23,021,027 and 22,819,299 paired-end reads with an insert size of 320 bp for C. fetus subsp. venerealis bv. venerealis strain B6 and C. fetus subsp. venerealis bv. intermedius strain 642-21, respectively. The resulting libraries were quality trimmed using an in-house script and then assembled using ABySS (6,7). The assembly yielded 80 and 126 scaffolds encoding 1,945,080 bp and 1,942.51 bp for the C. fetus subsp. venerealis bv. venerealis strain B6 and C. fetus subsp. venerealis bv. intermedius strain 642-21, respectively. Preliminary comparative analyses show that C. fetus subsp. venerealis bv. venerealis strain B6 encodes a highly conserved counterpart of the known ATCC 19438 pathogenicity island (PAI) encoding type IV secretory genes (8). In contrast, C. fetus subsp. venerealis bv. intermedius strain 642-21 appears to either lack or contain a highly divergent PAI. However, more extensive analyses are needed to confirm that C. fetus subsp. venerealis bv. intermedius strain 642-21 may have a distinct or divergent type IV secretory machinery and/or that this may represent an environmental adaptation.
Nucleotide sequence accession numbers. The whole-genome shotgun assemblies for the C. fetus subsp. venerealis bv. venerealis strain B6 and C. fetus subsp. venerealis bv. intermedius strain 642-21 were deposited at GenBank/DDBJ/EMBL under the accession numbers AJMC00000000 and AJSG00000000, respectively.

ACKNOWLEDGMENTS
This work was partially supported by Australian Research Council Linkage grant LP0883837 and Zoetis Australia.
We acknowledge laboratory technical support provided by Sandy Jarrett (Animal Science, Queensland Department of Agriculture, Fisheries and Forestry). We also thank George Moutafis (Zoetis), who coordinated the DNA extraction for both biovar strains. We also acknowledge Bioplatforms Australia and iVEC for providing access to their computational pipelines and computational resources used in this study.