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Archive

February 2019; Volume 8,Issue 6

Genome Sequences

  • Draft Genome Sequence of <span class="named-content genus-species" id="named-content-1">Enterococcus plantarum</span> Strain TRW2, Isolated from Lettuce
    Genome Sequences
    Draft Genome Sequence of Enterococcus plantarum Strain TRW2, Isolated from Lettuce

    We report the draft genome sequence for Enterococcus plantarum strain TRW2, isolated from the phyllosphere of romaine lettuce. The draft sequence consists of 3,383,441 bp, with a G+C content of 35.8% and 3,218 protein-coding genes.

    Inhwan You, Sukjung Choi, Thomas R. Williams, Maria L. Marco, Eun Bae Kim
    7 Feb 2019
  • Complete Genome Sequence of O/VN1/2014, a Foot-and-Mouth Disease Virus of Serotype O Isolated in Vietnam in 2014
    Genome Sequences
    Complete Genome Sequence of O/VN1/2014, a Foot-and-Mouth Disease Virus of Serotype O Isolated in Vietnam in 2014

    In this article, we report the complete genome sequence of foot-and-mouth disease virus (FMDV) strain O/VN1/2014 isolated in Vietnam (Lao Cai) in 2014. The virus belongs to serotype O, topotype South East Asia (SEA), and genotype Mya-98 (O/SEA/Mya-98).

    HyunJi Lee, JinJu Nah, Soyoon Ryoo, Taeseong Kim, Sumee Lee, Semin Jung, Jinwoo Lee, Hye-jin Park, Byeong-suk Ha, Jeong-won Lee, Tho Dang Nguyen, Long Thanh To, Sung-Hwan Wee, Bok Kyung Ku
    7 Feb 2019
  • Draft Genome Sequence of <span class="named-content genus-species" id="named-content-1">Listeria monocytogenes</span> CIIMS-NV-3, a Strain Isolated from Vaginal Discharge of a Woman from Central India
    Genome Sequences
    Draft Genome Sequence of Listeria monocytogenes CIIMS-NV-3, a Strain Isolated from Vaginal Discharge of a Woman from Central India

    We present here the draft genome sequence of Listeria monocytogenes CIIMS-NV-3, a serovar 4b strain isolated from the vaginal swab of a female patient from central India. The availability of this genome may provide useful information on virulence characteristics for comparative genomic analysis.

    Pooja M. Kishnani, Nitin V. Kurkure, Sukhadeo B. Barbuddhe, Swapnil P. Doijad, Trinad Chakraborty, H. F. Daginawala, Lokendra K. Singh, Rajpal S. Kashyap
    7 Feb 2019
  • Draft Genome Sequence of the Putative Marine Pathogen <em>Thalassobius</em> sp. I31.1
    Genome Sequences
    Draft Genome Sequence of the Putative Marine Pathogen Thalassobius sp. I31.1

    Thalassobius sp. I31.1 is a putative pathogen involved in epizootic shell disease in the American lobster (Homarus americanus). We report here the draft genome sequence for Thalassobius sp. I31.1 and provide insight into its metabolism and links to environmental pollutant degradation.

    Hilary J. Ranson, Jason LaPorte, Edward Spinard, Andrei Y. Chistoserdov, Marta Gomez-Chiarri, David R. Nelson, David C. Rowley
    7 Feb 2019
  • Genome Sequence of <span class="named-content genus-species" id="named-content-1">Bacillus subtilis</span> subsp. <span class="named-content genus-species" id="named-content-2">subtilis</span> Strain IITK SM1, Isolated from Kitchen Waste Compost
    Genome Sequences
    Genome Sequence of Bacillus subtilis subsp. subtilis Strain IITK SM1, Isolated from Kitchen Waste Compost

    We report here the complete genome sequence of Bacillus subtilis subsp. subtilis strain IITK SM1, isolated from kitchen waste compost.

    Murugan Prem Anand, V. Chinnasamy Hariharan, Hari Shankar, Abhas Singh, Matheshwaran Saravanan
    7 Feb 2019
  • Complete Genome Sequence of an Atypical Porcine Pestivirus Strain, GX01-2018, from Guangxi Province, China
    Genome Sequences
    Complete Genome Sequence of an Atypical Porcine Pestivirus Strain, GX01-2018, from Guangxi Province, China

    We report the complete genome sequence of an atypical porcine pestivirus (APPV) strain named GX01-2018 that was isolated in Guangxi Province, China, from a suckling piglet showing congenital tremor. The whole genome consisted of 11,565 bp and shared 83.4% to 98.2% nucleotide identities and 91.9% to 99.1% amino acid identities with other APPV strains from different countries.

    Yanwen Yin, Kaichuang Shi, Wenchao Sun, Shenglan Mo
    7 Feb 2019
  • Draft Genome Assembly of the False Spider Mite <em>Brevipalpus yothersi</em>
    Genome Sequences
    Draft Genome Assembly of the False Spider Mite Brevipalpus yothersi

    The false spider mite Brevipalpus yothersi infests a broad host plant range and has become one of the most economically important species within the genus Brevipalpus. This phytophagous mite inflicts damage by both feeding on plants and transmitting plant viruses.

    Denise Navia, Valdenice M. Novelli, Stephane Rombauts, Juliana Freitas-Astúa, Renata Santos de Mendonça, Maria Andreia Nunes, Marcos A. Machado, Yao-Cheng Lin, Phuong Le, Zaichao Zhang, Miodrag Grbić, Nicky Wybouw, Johannes A. J. Breeuwer, Thomas Van Leeuwen, Yves Van de Peer
    7 Feb 2019
  • Draft Genome Sequences of <em>Penicillium</em> spp. from Deeply Buried Oligotrophic Marine Sediments
    Genome Sequences
    Draft Genome Sequences of Penicillium spp. from Deeply Buried Oligotrophic Marine Sediments

    Here, we report genome sequences of two Penicillium isolates from below the seafloor of the oligotrophic South Pacific Gyre. These genomes are the first reported for fungi from deeply buried marine sediment.

    Morgan S. Sobol, Tatsuhiko Hoshino, Taiki Futagami, Fumio Inagaki, Brandi Kiel Reese
    7 Feb 2019
  • First Complete Genome Sequence of <em>Cucurbit Aphid-Borne Yellows Virus</em> from Pumpkin in the United States
    Genome Sequences
    First Complete Genome Sequence of Cucurbit Aphid-Borne Yellows Virus from Pumpkin in the United States

    Cucurbit aphid-borne yellows virus (CABYV) was first described in France in 1992 and since then has been reported in various parts of the world, including the United States. Here, we present the first complete genome sequence of a CABYV isolate (BL4) that was collected from pumpkin during the 2017 growing season in Oklahoma.

    Vivek Khanal, Akhtar Ali
    7 Feb 2019
  • Whole-Genome Shotgun Sequence of <span class="named-content genus-species" id="named-content-1">Streptococcus agalactiae</span> Sequence Type 176 Strain 3966RFQB from a Dairy Herd in Selangor, Malaysia
    Genome Sequences
    Whole-Genome Shotgun Sequence of Streptococcus agalactiae Sequence Type 176 Strain 3966RFQB from a Dairy Herd in Selangor, Malaysia

    Streptococcus agalactiae, commonly known as group B streptococcus (GBS), is among the most implicated pathogens in bovine mastitis worldwide. Proper control measures can curb both economic and public health effects it may cause.

    A. Bashir, Z. Zunita, F. F. A. Jesse, S. Z. Ramanoon, M. L. Mohd-Azmi
    7 Feb 2019
  • First Complete Genome Sequence of Human Coronavirus HKU1 from a Nonill Bat Guano Miner in Thailand
    Genome Sequences
    First Complete Genome Sequence of Human Coronavirus HKU1 from a Nonill Bat Guano Miner in Thailand

    Human coronavirus HKU1 (HCoV-HKU1) was first detected in a patient with viral pneumonia from Hong Kong in 2004. Here, we report the first complete genome sequence of HCoV-HKU1 from Thailand, obtained from a nonill person who worked in a bat cave.

    Yutthana Joyjinda, Apaporn Rodpan, Pongtorn Chartpituck, Krairerk Suthum, Suphaluk Yaemsakul, Thaniwan Cheun-Arom, Saowalak Bunprakob, Kevin J. Olival, Martha M. Stokes, Thiravat Hemachudha, Supaporn Wacharapluesadee
    7 Feb 2019
  • First Draft Genome Sequence of <span class="named-content genus-species" id="named-content-1">Leishmania</span> (<span class="named-content genus-species" id="named-content-2">Viannia</span>) <span class="named-content genus-species" id="named-content-3">lainsoni</span> Strain 216-34, Isolated from a Peruvian Clinical Case
    Genome Sequences
    First Draft Genome Sequence of Leishmania (Viannia) lainsoni Strain 216-34, Isolated from a Peruvian Clinical Case

    We present here the first draft genome sequence of Leishmania (Viannia) lainsoni strain 216-34, sequenced using PacBio and MiSeq platforms. PacBio contigs were generated from de novo assemblies using CANU version 1.6 and...

    Wuling Lin, Dhwani Batra, Vidhya Narayanan, Lori A. Rowe, Mili Sheth, Yueli Zheng, Phalasy Juieng, Vladimir Loparev, Marcos de Almeida
    7 Feb 2019
  • Complete Genome Sequence of <em>Malassezia restricta</em> CBS 7877, an Opportunist Pathogen Involved in Dandruff and Seborrheic Dermatitis
    Genome Sequences
    Complete Genome Sequence of Malassezia restricta CBS 7877, an Opportunist Pathogen Involved in Dandruff and Seborrheic Dermatitis

    Malassezia restricta, one of the predominant basidiomycetous yeasts present on human skin, is involved in scalp disorders. Here, we report the complete genome sequence of the lipophilic Malassezia restricta CBS 7877 strain, which will facilitate the study of the mechanisms underlying its commensal...

    Stanislas C. Morand, Morgane Bertignac, Agnes Iltis, Iris C. R. M. Kolder, Walter Pirovano, Roland Jourdain, Cécile Clavaud
    7 Feb 2019
  • Whole-Genome Sequence of Multidrug-Resistant <span class="named-content genus-species" id="named-content-1">Bibersteinia trehalosi</span> Strain OADDL-BT1
    Genome Sequences
    Whole-Genome Sequence of Multidrug-Resistant Bibersteinia trehalosi Strain OADDL-BT1

    The genome of a multidrug-resistant strain of Bibersteinia trehalosi isolated from a calf with chronic pneumonia is presented. The draft genome sequences have been deposited at DDBJ/ENA/GenBank.

    Sai Narayanan, Haley Bates, Anthony Confer, Brian Couger, Akhilesh Ramachandran
    7 Feb 2019
  • Complete Genome Sequences of <span class="named-content genus-species" id="named-content-1">Mycobacterium smegmatis</span> Phages Chewbacca, Reptar3000, and Riparian, Isolated in Las Vegas, Nevada
    Genome Sequences
    Complete Genome Sequences of Mycobacterium smegmatis Phages Chewbacca, Reptar3000, and Riparian, Isolated in Las Vegas, Nevada

    Here, we present the complete genome sequences of Mycobacterium smegmatis phages Chewbacca, Reptar3000, and Riparian, isolated from soil in Las Vegas, NV. The phages were isolated and annotated by undergraduate students enrolled in the Phage Discovery course offered by the School of Life Sciences at the University of Nevada, Las Vegas.

    Alicia Salisbury, Erin Cassin, Kevin Ayala-Pineda, Nicolas Barroga, Vanessa Cadiz, Ramiro Cisneros, Joseph Fersini, Tiffany Jeanite, Jonathan Juste, Juvie Ines, Gabriel Leyva, Dyanne Macalinao, Spencer Muscelli, Sophia Nhan, Gustavo S. Reyes, Heather Rhoden, Rodney Tan, Erika Torres, Krystal Tran, Georgette Uriarte-Valle, Christopher Wallace, Simon Wong, Kurt Regner, Christy Strong, Philippos K. Tsourkas
    7 Feb 2019
  • Draft Genome Sequence of <span class="named-content genus-species" id="named-content-1">Microcystis aeruginosa</span> NIES-4285, Isolated from Brackish Water (Lake Abashiri, Japan)
    Genome Sequences
    Draft Genome Sequence of Microcystis aeruginosa NIES-4285, Isolated from Brackish Water (Lake Abashiri, Japan)

    Microcystis aeruginosa is a bloom-forming cyanobacterium found in fresh and brackish waters worldwide. We sequenced the whole genome of M. aeruginosa NIES-4285, isolated from Lake Abashiri, Japan.

    Yuuhiko Tanabe, Haruyo Yamaguchi
    7 Feb 2019

Omics Data Sets

  • The Foliar Endophyte <em>Phialocephala scopiformis</em> DAOMC 229536 Proteome When Grown on Wood Used as the Sole Carbon Source
    Omics Data Sets
    The Foliar Endophyte Phialocephala scopiformis DAOMC 229536 Proteome When Grown on Wood Used as the Sole Carbon Source

    The conifer needle endophyte Phialocephala scopiformis DAOMC 229536 was cultivated in medium containing ground Pinus contorta wood as the sole carbon source. Mass spectrometry analyses identified 590 proteins.

    Jennifer M. Bhatnagar, Grzegorz Sabat, Daniel Cullen
    7 Feb 2019
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Microbiology Resource Announcements: 8 (6)

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volume 8, issue 6
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