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Archive

June 2019; Volume 8,Issue 23

Genome Sequences

  • Draft Genome Sequence of <span class="named-content genus-species" id="named-content-1">Butyricimonas faecihominis</span> 30A1, Isolated from Feces of a Japanese Alzheimer’s Disease Patient
    Genome Sequences
    Draft Genome Sequence of Butyricimonas faecihominis 30A1, Isolated from Feces of a Japanese Alzheimer’s Disease Patient

    Butyricimonas faecihominis 30A1, a butyrate-producing bacterium, was isolated from feces of a Japanese Alzheimer’s disease patient. Here, we report the draft genome sequence of this organism.

    Tien Thi Thuy Nguyen, Kenshiro Oshima, Hidehiro Toh, Anushka Khasnobish, Yusuke Fujii, Kensuke Arakawa, Hidetoshi Morita
    6 Jun 2019
  • Genome Sequences of Three Cruciviruses Found in the Willamette Valley (Oregon)
    Genome Sequences
    Genome Sequences of Three Cruciviruses Found in the Willamette Valley (Oregon)

    Cruciviruses are single-stranded DNA (ssDNA) viruses whose genomes suggest the possibility of gene transfer between DNA and RNA viruses. Many crucivirus genome sequences have been found in metagenomic data sets, although no crucivirus has been isolated.

    Ignacio de la Higuera, Ellis L. Torrance, Alyssa A. Pratt, George W. Kasun, Amberlee Maluenda, Kenneth M. Stedman
    6 Jun 2019
  • Complete Genome Sequence of a Novel <em>Myoviridae</em> Phage, SfΦ01, Infecting <span class="named-content genus-species" id="named-content-1">Shigella</span> spp.
    Genome Sequences
    Complete Genome Sequence of a Novel Myoviridae Phage, SfΦ01, Infecting Shigella spp.

    The Shigella bacterium is one of the most significant causes of waterborne and foodborne bacterial dysentery. A lytic bacteriophage infecting Shigella flexneri was isolated from wastewater in Japan.

    Masaaki Kitajima, Satoshi Ishii, Tatsuma Takagi, Satoshi Okabe
    6 Jun 2019
  • Draft Genome Sequence of <span class="named-content genus-species" id="named-content-1">Streptococcus suis</span> S10, a Virulent Strain Used in Experimental Pig Infections
    Genome Sequences
    Draft Genome Sequence of Streptococcus suis S10, a Virulent Strain Used in Experimental Pig Infections

    Here, we report the draft whole-genome sequence of Streptococcus suis strain S10, isolated from the tonsils of a healthy pig. S. suis S10 belongs to the highly virulent serotype 2, which includes isolates that cause infectious diseases, including meningitis, in pigs and human.

    Rogier A. Gaiser, Aldert L. Zomer, Jerry M. Wells, Peter van Baarlen
    6 Jun 2019
  • Complete Genome Sequence of <span class="named-content genus-species" id="named-content-1">Halomonas sulfidaeris</span> Strain Esulfide1 Isolated from a Metal Sulfide Rock at a Depth of 2,200 Meters, Obtained Using Nanopore Sequencing
    Genome Sequences
    Complete Genome Sequence of Halomonas sulfidaeris Strain Esulfide1 Isolated from a Metal Sulfide Rock at a Depth of 2,200 Meters, Obtained Using Nanopore Sequencing

    We report the complete genome sequence of Halomonas sulfidaeris ATCC BAA-803, isolated from a metal sulfide rock at a depth of 2,200 m in the Northeast Pacific Ocean. The assembled genome comprised one circular chromosome of 4.20 Mb and one large plasmid of 273 kb.

    Motofumi Saito, Akane Nishigata, Josephine Galipon, Kazuharu Arakawa
    6 Jun 2019
  • Draft Genome Sequences of Antibiotic-Resistant <span class="named-content genus-species" id="named-content-1">Escherichia coli</span> Isolates from U.S. Wastewater Treatment Plants
    Genome Sequences
    Draft Genome Sequences of Antibiotic-Resistant Escherichia coli Isolates from U.S. Wastewater Treatment Plants

    The spread of antibiotic-resistant microorganisms is a major public health concern. Here, we report the draft genome sequences of three Escherichia coli isolates from primary effluent collected from geographically dispersed U.S.

    Vicente Gomez-Alvarez, Jill Hoelle
    6 Jun 2019
  • Draft Genome Sequences of Two <span class="named-content genus-species" id="named-content-1">Streptococcus pneumoniae</span> Strains Causing Invasive Infections in Children in Qatar
    Genome Sequences
    Draft Genome Sequences of Two Streptococcus pneumoniae Strains Causing Invasive Infections in Children in Qatar

    Invasive pneumococcal infections are a major cause of morbidity and mortality in the pediatric population. We report the draft genomes of two clinical Streptococcus pneumoniae isolates associated with severe infections in children in Qatar.

    Clement K. M. Tsui, Sathyavathi Sundararaju, Hassan Al Mana, Eva Thomas, Patrick Tang, Mohammad Rubayet Hasan, Andres Perez-Lopez
    6 Jun 2019
  • Draft Genome Sequence of <span class="named-content genus-species" id="named-content-1">Haemophilus haemolyticus</span> Strain 16/010 O, Isolated from a Sputum Sample from a Cystic Fibrosis Patient
    Genome Sequences
    Draft Genome Sequence of Haemophilus haemolyticus Strain 16/010 O, Isolated from a Sputum Sample from a Cystic Fibrosis Patient

    Haemophilus haemolyticus is considered a commensal of the respiratory tract that can cause opportunistic infections. It is closely related to Haemophilus influenzae.

    Ad C. Fluit, Jumamurat R. Bayjanov, Michael Tunney, J. Stuart Elborn, Malbert R. C. Rogers, Anita C. Schürch, Miquel B. Ekkelenkamp
    6 Jun 2019
  • Draft Genome Sequence of <span class="named-content genus-species" id="named-content-1">Bacillus coagulans</span> MA-13, a Thermophilic Lactic Acid Producer from Lignocellulose
    Genome Sequences
    Draft Genome Sequence of Bacillus coagulans MA-13, a Thermophilic Lactic Acid Producer from Lignocellulose

    Bacillus coagulans MA-13 is an efficient lactic acid producer which withstands high concentrations of the growth inhibitors formed during the pretreatment of lignocellulosic feedstock. This draft genome sequence is expected to pave the way toward the understanding of mechanisms responsible for the robustness of MA-13 during simultaneous saccharification and...

    Martina Aulitto, Salvatore Fusco, Carl Johan Franzén, Andrea Strazzulli, Marco Moracci, Simonetta Bartolucci, Patrizia Contursi
    6 Jun 2019
  • Draft Genome Sequence of <span class="named-content genus-species" id="named-content-1">Streptomyces</span> sp. Strain RFCAC02, Isolated from the Gut Microflora of the Pacific Chub Mackerel <span class="named-content genus-species" id="named-content-2">Scomber japonicus peruanus</span>
    Genome Sequences
    Draft Genome Sequence of Streptomyces sp. Strain RFCAC02, Isolated from the Gut Microflora of the Pacific Chub Mackerel Scomber japonicus peruanus

    A new strain of Streptomyces sp., strain RFCAC02, was isolated from the gut of the Pacific chub mackerel Scomber japonicus peruanus. This strain produces a variety of secondary metabolites.

    Wilbert Serrano, Raul M. Olaechea, Joachim Wink, Michael W. Friedrich
    6 Jun 2019
  • Complete Chloroplast Genome Sequence of a White Spruce (<span class="named-content genus-species" id="named-content-1">Picea glauca</span>, Genotype WS77111) from Eastern Canada
    Genome Sequences
    Complete Chloroplast Genome Sequence of a White Spruce (Picea glauca, Genotype WS77111) from Eastern Canada

    Here, we present the complete chloroplast genome sequence of white spruce (Picea glauca, genotype WS77111), a coniferous tree widespread in the boreal forests of North America. This sequence contributes to genomic and phylogenetic analyses of the Picea genus that are part of ongoing research to understand their adaptation to environmental stress.

    ...
    Diana Lin, Lauren Coombe, Shaun D. Jackman, Kristina K. Gagalova, René L. Warren, S. Austin Hammond, Heather Kirk, Pawan Pandoh, Yongjun Zhao, Richard A. Moore, Andrew J. Mungall, Carol Ritland, Barry Jaquish, Nathalie Isabel, Jean Bousquet, Steven J. M. Jones, Joerg Bohlmann, Inanc Birol
    6 Jun 2019
  • Complete Genome Sequence of <span class="named-content genus-species" id="named-content-1">Escherichia coli</span> Myophage Minorna
    Genome Sequences
    Complete Genome Sequence of Escherichia coli Myophage Minorna

    The Gram-negative bacterium Escherichia coli causes many diseases, and antibiotic resistance has become a problem for their treatment. Bacteriophages may present a viable treatment alternative.

    Katherine Rogers, Lorna Min, Heather Newkirk, Mei Liu, Jolene Ramsey
    6 Jun 2019
  • Complete Genome Sequence of Hospital-Acquired Methicillin-Resistant <span class="named-content genus-species" id="named-content-1">Staphylococcus aureus</span> Strain WCUH29
    Genome Sequences
    Complete Genome Sequence of Hospital-Acquired Methicillin-Resistant Staphylococcus aureus Strain WCUH29

    The hospital-acquired methicillin-resistant Staphylococcus aureus (HA-MRSA) strain WCUH29 has been intensively and widely used as a model system for identification and evaluation of novel antibacterial targets and pathogenicity. In this announcement, we report the complete genome sequence of HA-MRSA WCUH29 (NCIMB 40771).

    Ting Lei, Ying Zhang, Junshu Yang, Kevin Silverstein, Yinduo Ji
    6 Jun 2019
  • Draft Genome Sequence of Urease-Producing <em>Pseudorhodobacter</em> sp. Strain E13, Isolated from the Yellow Sea in Gunsan, South Korea
    Genome Sequences
    Draft Genome Sequence of Urease-Producing Pseudorhodobacter sp. Strain E13, Isolated from the Yellow Sea in Gunsan, South Korea

    Here, we report the draft genome sequence of Pseudorhodobacter sp. strain E13, a Gram-negative, aerobic, nonflagellated, and rod-shaped bacterium which was isolated from the Yellow Sea in South Korea. The assembled genome sequence is 3,878,578 bp long with 3,646 protein-coding sequences in 159 contigs.

    Si Chul Kim, Hyo Jung Lee
    6 Jun 2019
  • Draft Genome Sequence of <span class="named-content genus-species" id="named-content-1">Streptomyces thermocarboxydus</span> BPSAC147, a Potentially Plant Growth-Promoting Endophytic Bacterium
    Genome Sequences
    Draft Genome Sequence of Streptomyces thermocarboxydus BPSAC147, a Potentially Plant Growth-Promoting Endophytic Bacterium

    Streptomyces thermocarboxydus strain BPSAC147 is an endophytic actinobacterium isolated from root tissues of Rhynchotechum ellipticum in Mizoram, Northeast India. The strain showed potentially plant growth-promoting and biocontrol activities.

    Ajit Kumar Passari, Vinay Rajput, Zothanpuia, Lakshmi P. M. Priya, Mahesh Dharne, Syed Dastager, Oommen K. Mathew, Abeer Hashem, Elsayed Fathi Abd_Allah, Bhim Pratap Singh
    6 Jun 2019
  • Draft Genome Sequences of Novel Sequence Type 3559 Carbapenem-Resistant <span class="named-content genus-species" id="named-content-1">Klebsiella pneumoniae</span> Isolates Recovered from the Environment
    Genome Sequences
    Draft Genome Sequences of Novel Sequence Type 3559 Carbapenem-Resistant Klebsiella pneumoniae Isolates Recovered from the Environment

    Here, we report a novel sequence type, 3559, from four genomes of Klebsiella pneumoniae isolates from South African hospital wastewater, influent wastewater, river water, and riverbed sediment. The genome annotation indicated a wide variety of resistance genes, including blaKPC-2, and virulence factors revealing their possible pathogenicity.

    ...
    Mutshiene Deogratias Ekwanzala, Phumudzo Budeli, John Barr Dewar, Ilunga Kamika, Maggy Ndombo Benteke Momba
    6 Jun 2019
  • Draft Genome Sequence of <em>Salipaludibacillus keqinensis</em> ACCC 60430<sup>T</sup>, an Aerobic Halophilic Bacterium Isolated from a Salt Lake
    Genome Sequences
    Draft Genome Sequence of Salipaludibacillus keqinensis ACCC 60430T, an Aerobic Halophilic Bacterium Isolated from a Salt Lake

    The haloalkaliphilic bacterium Salipaludibacillus keqinensis ACCC 60430T, which grows optimally at 8.0% (wt/vol) Na+ and pH 9.0, was isolated from Keqin Lake in Qiqihaer, China. The draft genome includes 4,006 predicted genes and 3,784 coding sequences (CDSs).

    Luna Dong, Shuangyan Wang, Hao Cao, Baisuo Zhao, Kun Wu, Haisheng Wang
    6 Jun 2019
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Microbiology Resource Announcements: 8 (23)

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