Skip to main content
  • ASM
    • Antimicrobial Agents and Chemotherapy
    • Applied and Environmental Microbiology
    • Clinical Microbiology Reviews
    • Clinical and Vaccine Immunology
    • EcoSal Plus
    • Eukaryotic Cell
    • Microbiology Resource Announcements
    • Infection and Immunity
    • Journal of Bacteriology
    • Journal of Clinical Microbiology
    • Journal of Microbiology & Biology Education
    • Journal of Virology
    • mBio
    • Microbiology and Molecular Biology Reviews
    • Microbiology Spectrum
    • Molecular and Cellular Biology
    • mSphere
    • mSystems
  • Log in
  • My alerts
  • My Cart

Main menu

  • Home
  • Articles
    • Latest Articles
    • Archive
  • Types of Resources
    • Amplicon Sequence Collections
    • Culture Collections/Mutant Libraries
    • Databases and Software
    • Omics Data Sets
    • Other Genetic Resources
    • Genome Sequences
  • For Authors
    • Getting Started
    • Submit a Manuscript
    • Scope
    • Editorial Policy
    • Submission, Review, & Publication Processes
    • Organization and Format
    • Errata, Author Corrections, Retractions
    • Illustrations and Tables
    • Nomenclature
    • Publication Fees
    • Ethics Resources and Policies
  • About the Journal
    • About MRA
    • Editor in Chief
    • Board of Editors
    • For Reviewers
    • For the Media
    • For Librarians
    • For Advertisers
    • Alerts
    • RSS
    • FAQ
  • ASM
    • Antimicrobial Agents and Chemotherapy
    • Applied and Environmental Microbiology
    • Clinical Microbiology Reviews
    • Clinical and Vaccine Immunology
    • EcoSal Plus
    • Eukaryotic Cell
    • Microbiology Resource Announcements
    • Infection and Immunity
    • Journal of Bacteriology
    • Journal of Clinical Microbiology
    • Journal of Microbiology & Biology Education
    • Journal of Virology
    • mBio
    • Microbiology and Molecular Biology Reviews
    • Microbiology Spectrum
    • Molecular and Cellular Biology
    • mSphere
    • mSystems

User menu

  • Log in
  • My alerts
  • My Cart

Search

  • Advanced search
Microbiology Resource Announcements
publisher-logosite-logo

Advanced Search

  • Home
  • Articles
    • Latest Articles
    • Archive
  • Types of Resources
    • Amplicon Sequence Collections
    • Culture Collections/Mutant Libraries
    • Databases and Software
    • Omics Data Sets
    • Other Genetic Resources
    • Genome Sequences
  • For Authors
    • Getting Started
    • Submit a Manuscript
    • Scope
    • Editorial Policy
    • Submission, Review, & Publication Processes
    • Organization and Format
    • Errata, Author Corrections, Retractions
    • Illustrations and Tables
    • Nomenclature
    • Publication Fees
    • Ethics Resources and Policies
  • About the Journal
    • About MRA
    • Editor in Chief
    • Board of Editors
    • For Reviewers
    • For the Media
    • For Librarians
    • For Advertisers
    • Alerts
    • RSS
    • FAQ

Archive

May 2019; Volume 8,Issue 18

Genome Sequences

  • Genome Sequence of <span class="named-content genus-species" id="named-content-1">Streptomyces cavourensis</span> 1AS2a, a Rhizobacterium Isolated from the Brazilian Cerrado Biome
    Genome Sequences
    Genome Sequence of Streptomyces cavourensis 1AS2a, a Rhizobacterium Isolated from the Brazilian Cerrado Biome

    Streptomyces cavourensis strain 1AS2a, isolated from wheat rhizosphere in the Brazilian Neotropical savanna, exhibits strong antimicrobial activities. Its genome comprises 7,600,475 bp with 6,590 open reading frames (ORFs) that reveal 30 biosynthetic gene clusters (BGCs).

    Harold Alexander Vargas Hoyos, Suikinai Nobre Santos, Gabriel Padilla, Itamar Soares Melo
    2 May 2019
  • Complete Genome Sequence of a Class I Newcastle Disease Virus Strain Isolate from a Breeding Chicken Flock in Sichuan, China
    Genome Sequences
    Complete Genome Sequence of a Class I Newcastle Disease Virus Strain Isolate from a Breeding Chicken Flock in Sichuan, China

    A Newcastle disease virus (NDV) strain, APMV-1/Chicken/China(SC)/PT3/2016, was isolated from asymptomatic chickens at a breeding farm in China. The PT3 strain has a genome length of 15,198 nucleotides and is classified as subgenotype 1b of class I.

    Shu-yun Li, Guo-jin You, Li-jing Du, Wen-wen Li, Yue-yue Liu, Ji-teng Du, Jing Xia, Yong Huang
    2 May 2019
  • Complete Genome Sequence of <span class="named-content genus-species" id="named-content-1">Salmonella enterica</span> Serovar Typhimurium Siphophage Siskin
    Genome Sequences
    Complete Genome Sequence of Salmonella enterica Serovar Typhimurium Siphophage Siskin

    Bacteriophage Siskin is a member of the χ-like siphovirus phage cluster that infects Salmonella enterica serovar Typhimurium strain LT2. Here, we report the complete 58,476-bp sequence of the Siskin genome, provide confirmation of its genomic termini, and describe a potentially new class of holins and endolysins found in the lysis cassette.

    Chandler O’Leary, Yicheng Xie, Rohit Kongari, Jason J. Gill, Mei Liu
    2 May 2019
  • Genome Sequence of Pigmented Siderophore-Producing Strain <span class="named-content genus-species" id="named-content-1">Serratia marcescens</span> SM6
    Genome Sequences
    Genome Sequence of Pigmented Siderophore-Producing Strain Serratia marcescens SM6

    Here we present a draft genome sequence of laboratory strain Serratia marcescens SM6. Using the antiSMASH 5.0 prediction tool, we identified five biosynthetic gene clusters involved in secondary metabolite production (two siderophores and a biosurfactant serratamolide, a glucosamine derivative, and a thiopeptide).

    Irina V. Khilyas, Kanat A. Tursunov, Tatiana V. Shirshikova, Leysan K. Kamaletdinova, Lilia E. Matrosova, Prerak T. Desai, Michael McClelland, Lydia M. Bogomolnaya
    2 May 2019
  • Draft Genome Sequence of <em>Enterobacter</em> sp. Strain A8, a Carbazole-Degrading Bacterium
    Genome Sequences
    Draft Genome Sequence of Enterobacter sp. Strain A8, a Carbazole-Degrading Bacterium

    We present here the draft genome sequence of a carbazole-degrading Enterobacter species. The draft genome sequence will provide insight into various genes involved in the degradation of carbazole and other related aromatic compounds.

    Nidhi Gupta, Kelly A. Skinner, Samiya Khan, Janaka N. Edirisinghe, Christopher S. Henry
    2 May 2019
  • Draft Whole-Genome Sequences of Three Isolates of a Novel Strain of a <em>Campylobacter</em> sp. Isolated from New Zealand Birds and Water
    Genome Sequences
    Draft Whole-Genome Sequences of Three Isolates of a Novel Strain of a Campylobacter sp. Isolated from New Zealand Birds and Water

    Campylobacter spp. are frequently found associated with the avian intestinal tract. Most are commensals, but some can cause human campylobacteriosis.

    David A. Wilkinson, Anne C. Midwinter, Errol Kwan, Samuel J. Bloomfield, Nigel P. French, Patrick J. Biggs
    2 May 2019
  • Genome Sequence of Tilapia Lake Virus Associated with Syncytial Hepatitis of Tilapia in an Ecuadorian Aquaculture Facility
    Genome Sequences
    Genome Sequence of Tilapia Lake Virus Associated with Syncytial Hepatitis of Tilapia in an Ecuadorian Aquaculture Facility

    Here, we report the complete coding sequences of tilapia lake virus (TiLV) associated with syncytial hepatitis of tilapia (SHT). The TiLV strain was sequenced from the liver RNA extract of a moribund Nile tilapia (Oreochromis niloticus) fingerling from an Ecuadorian aquaculture facility in 2012.

    Kuttichantran Subramaniam, Hugh W. Ferguson, Richard Kabuusu, Thomas B. Waltzek
    2 May 2019
  • Draft Genome Sequence of <em>Chlorobium</em> sp. Strain N1, a Marine Fe(II)-Oxidizing Green Sulfur Bacterium
    Genome Sequences
    Draft Genome Sequence of Chlorobium sp. Strain N1, a Marine Fe(II)-Oxidizing Green Sulfur Bacterium

    Here, we present the draft genome sequence of the halotolerant photoferrotroph Chlorobium sp. strain N1. This draft genome provides insights into the genomic potential of the only marine Fe(II)-oxidizing green sulfur bacterium (GSB) available in culture and expands our views on the metabolic capabilities of Fe(II)-oxidizing GSB more generally.

    Casey Bryce, Nia Blackwell, Daniel Straub, Sara Kleindienst, Andreas Kappler
    2 May 2019
  • Genome Sequences of Two Choline-Utilizing Methanogenic Archaea, <em>Methanococcoides</em> spp., Isolated from Marine Sediments
    Genome Sequences
    Genome Sequences of Two Choline-Utilizing Methanogenic Archaea, Methanococcoides spp., Isolated from Marine Sediments

    The genomes of two Methanococcoides spp. that were isolated from marine sediments and are capable of carrying out methanogenesis from choline and other methylotrophic substrates were sequenced. The average nucleotide identity and in silico DNA-DNA hybridization analyses demonstrate that they represent species different from those previously described.

    ...
    Gordon Webster, Alex J. Mullins, Andrew J. Watkins, Edward Cunningham-Oakes, Andrew J. Weightman, Eshwar Mahenthiralingam, Henrik Sass
    2 May 2019
  • Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus <span class="named-content genus-species" id="named-content-1">Dichomitus squalens</span>
    Genome Sequences
    Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens

    Here, we report the draft genome sequences of three isolates of the wood-decaying white-rot basidiomycete fungus Dichomitus squalens. The genomes of these monokaryons were sequenced to provide more information on the intraspecies genomic diversity of this fungus and were compared to the previously sequenced genome of D. squalens LYAD-421 SS1.

    ...
    Sara Casado López, Mao Peng, Paul Daly, Bill Andreopoulos, Jasmyn Pangilinan, Anna Lipzen, Robert Riley, Steven Ahrendt, Vivian Ng, Kerrie Barry, Chris Daum, Igor V. Grigoriev, Kristiina S. Hildén, Miia R. Mäkelä, Ronald P. de Vries
    2 May 2019
  • Draft Genome Sequence from a Putative New Genus and Species in the Family <em>Methanoregulaceae</em> Isolated from the Anoxic Basin of Lake Untersee in East Antarctica
    Genome Sequences
    Draft Genome Sequence from a Putative New Genus and Species in the Family Methanoregulaceae Isolated from the Anoxic Basin of Lake Untersee in East Antarctica

    Here, we report the draft genome sequence for a new putative genus and species in the Methanoregulaceae family, whose members are generally slow-growing rod-shaped or coccoid methanogenic archaea. The information on this sediment-dwelling organism sheds light on the prokaryotes inhabiting isolated, deep, and extremely cold methane-rich environments.

    Nicole Y. Wagner, Aria S. Hahn, Dale Andersen, Mary Beth Wilhelm, Connor Morgan-Lang, Mia Vanderwilt, Sarah Stewart Johnson
    2 May 2019
  • First Complete Genome Sequence of <span class="named-content genus-species" id="named-content-1">Haematobacter massiliensis</span> OT1 (Chromosome and Multiple Plasmids), Isolated from Human Skin
    Genome Sequences
    First Complete Genome Sequence of Haematobacter massiliensis OT1 (Chromosome and Multiple Plasmids), Isolated from Human Skin

    Haematobacter massiliensis OT1 was isolated from human skin. This strain can catabolize 4-hydroxybenzoate.

    Jae Yun Lim, Munkhtsatsral Ganzorig, Shir-Ly Huang, Kyoung Lee
    2 May 2019
  • Draft Genome Sequence of <span class="named-content genus-species" id="named-content-1">Streptococcus parasuis</span> 4253, the First Available for the Species
    Genome Sequences
    Draft Genome Sequence of Streptococcus parasuis 4253, the First Available for the Species

    Here, we report the draft genome sequence of Streptococcus parasuis strain 4253. This is the first publicly available genome sequence of a S. parasuis strain.

    Marc J. A. Stevens, Nicole Cernela, Sabrina Corti, Roger Stephan
    2 May 2019
  • Complete Genome Sequence of a Colistin-Resistant Uropathogenic <span class="named-content genus-species" id="named-content-1">Escherichia coli</span> Sequence Type 131 <em>fimH</em>22 Strain Harboring <em>mcr-1</em> on an IncHI2 Plasmid, Isolated in Riyadh, Saudi Arabia
    Genome Sequences
    Complete Genome Sequence of a Colistin-Resistant Uropathogenic Escherichia coli Sequence Type 131 fimH22 Strain Harboring mcr-1 on an IncHI2 Plasmid, Isolated in Riyadh, Saudi Arabia

    We report the complete genome sequence of a colistin-resistant strain of uropathogenic Escherichia coli, isolated in January 2013 at King Abdulaziz Medical City (KAMC), Riyadh, Saudi Arabia. The isolate (named SA186) was sequence type 131 (ST131) and belonged to serotype O25b-H4 and clade B (fimH22).

    Majed F. Alghoribi, Michel Doumith, Mathew Upton, Sameera M. Al Johani, Maha Alzayer, Neil Woodford, Matthew J. Ellington, Hanan H. Balkhy
    2 May 2019
  • Near-Complete Genome Sequence of Avian Influenza Virus Strain A/mallard/Balkhash/6304/2014 (H1N1) from Kazakhstan
    Genome Sequences
    Near-Complete Genome Sequence of Avian Influenza Virus Strain A/mallard/Balkhash/6304/2014 (H1N1) from Kazakhstan

    An avian influenza virus strain, A/mallard/Balkhash/6304/2014 (H1N1), was isolated during a wild bird monitoring study in Kazakhstan in 2014. The virus was isolated from a wild mallard duck (Anas platyrhynchos) in eastern Kazakhstan.

    Kobey Karamendin, Aidyn Kydyrmanov, Saule Asanova, Elizaveta Khan, Klara Daulbayeva, Yermukhammet Kasymbekov, Marat Sayatov
    2 May 2019
  • Complete Genome Segment Sequences of Tomato Chlorotic Spot Virus from Peanut in Haiti
    Genome Sequences
    Complete Genome Segment Sequences of Tomato Chlorotic Spot Virus from Peanut in Haiti

    Tomato chlorotic spot virus (TCSV) is emerging as a significant constraint to vegetable and legume crops in the Americas. The complete genome sequence of a TCSV isolate naturally infecting peanut (Arachis hypogea) in Haiti was determined in the effort to build epidemiological knowledge of the virus.

    Raphael O. Adegbola, Robert C. Kemerait, Scott Adkins, Rayapati A. Naidu
    2 May 2019
  • Novel Circular Rep-Encoding Single-Stranded DNA Viruses Detected in Treated Wastewater
    Genome Sequences
    Novel Circular Rep-Encoding Single-Stranded DNA Viruses Detected in Treated Wastewater

    Here, we present the complete genome sequences of three circular replication-associated protein (Rep)-encoding single-stranded DNA (CRESS DNA) viruses detected in secondary treated and disinfected wastewater effluent. The discovered viruses, named wastewater CRESS DNA virus (WCDV)-1 to -3, represent novel viral...

    Karyna Rosario, Christina M. Morrison, Kaitlin A. Mettel, Walter Q. Betancourt
    2 May 2019
  • Complete Genome Sequences of Two USA300-Related Community-Associated Methicillin-Resistant <span class="named-content genus-species" id="named-content-1">Staphylococcus aureus</span> Clinical Isolates
    Genome Sequences
    Complete Genome Sequences of Two USA300-Related Community-Associated Methicillin-Resistant Staphylococcus aureus Clinical Isolates

    USA300 is a predominant community-associated methicillin-resistant Staphylococcus aureus strain causing significant morbidity and mortality in North America. We present the full annotated genome sequences of two methicillin-resistant Staphylococcus aureus isolates related to the USA300 pulsotype...

    Jo-Ann McClure, Kunyan Zhang
    2 May 2019
  • Draft Genome Sequences of Seven <span class="named-content genus-species" id="named-content-1">Legionella pneumophila</span> Isolates from a Hot Water System of a Large Building
    Genome Sequences
    Draft Genome Sequences of Seven Legionella pneumophila Isolates from a Hot Water System of a Large Building

    Public health data show that a significant fraction of the nation’s waterborne disease outbreaks are attributable to premise plumbing. We report the draft genome sequences of seven Legionella pneumophila serogroup 1 isolates from hot water lines of a large building.

    Vicente Gomez-Alvarez, Laura Boczek, Dawn King, Adin Pemberton, Stacy Pfaller, Mark Rodgers, Jorge SantoDomingo, Randy P. Revetta
    2 May 2019
  • Complete Genome Sequence of <span class="named-content genus-species" id="named-content-1">Serratia quinivorans</span> Strain 124R, a Facultative Anaerobe Isolated on Organosolv Lignin as a Sole Carbon Source
    Genome Sequences
    Complete Genome Sequence of Serratia quinivorans Strain 124R, a Facultative Anaerobe Isolated on Organosolv Lignin as a Sole Carbon Source

    The complete genome sequence of the gammaproteobacterial isolate Serratia quinivorans 124R consists of 5 Mb over 2 scaffolds and a G+C content of 52.85%. Genes relating to aromatic metabolism reflect its isolation on organosolv lignin as a sole carbon source under anoxic conditions as well as the potential for lignin biorefinery applications.

    Gina Chaput, Jacob Ford, Lani DeDiego, Achala Narayanan, Wing Yin Tam, Meghan Whalen, Marcel Huntemann, Alicia Clum, Alex Spunde, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, I-Min Chen, Dimitrios Stamatis, T. B. K. Reddy, Ronan O’Malley, Chris Daum, Nicole Shapiro, Natalia Ivanova, Nikos C. Kyrpides, Tanja Woyke, Tijana Glavina del Rio, Kristen DeAngelis
    2 May 2019
  • Transcriptome Sequencing of Immature Ants Reveals the Complete Genome Sequence of a New Isolate of <span class="named-content genus-species" id="named-content-1">Solenopsis invicta</span> <em>Virus 2</em> from the Mississippi Delta
    Genome Sequences
    Transcriptome Sequencing of Immature Ants Reveals the Complete Genome Sequence of a New Isolate of Solenopsis invicta Virus 2 from the Mississippi Delta

    Solenopsis invicta virus 2 (SINV-2) is an RNA virus that infects red imported fire ants. I report the genome sequence of SINV-2MSD, an isolate infecting ants collected from Mississippi.

    Margaret L. Allen
    2 May 2019
  • Complete Genome Sequence of <span class="named-content genus-species" id="named-content-1">Halomonas olivaria</span>, a Moderately Halophilic Bacterium Isolated from Olive Processing Effluents, Obtained by Nanopore Sequencing
    Genome Sequences
    Complete Genome Sequence of Halomonas olivaria, a Moderately Halophilic Bacterium Isolated from Olive Processing Effluents, Obtained by Nanopore Sequencing

    Here, we report the complete genome sequence of Halomonas olivaria strain TYRC17, a moderately halophilic, Gram-negative bacterium that was isolated from olive processing effluents. The 5-Mbp genome consists of 7,375 protein-coding sequences, including a variety of genes involved in tyrosol metabolism, nitrate respiration, and the production of polysaccharides.

    ...
    Shohei Nagata, Konosuke M. Ii, Tomoya Tsukimi, Masahiro C. Miura, Josephine Galipon, Kazuharu Arakawa
    2 May 2019
PreviousNext
Back to top

Microbiology Resource Announcements: 8 (18)

In This Issue

volume 8, issue 18
Sign up for alerts

Jump to

  • Genome Sequences

About

  • About MRA
  • Editor in Chief
  • Board of Editors
  • Policies
  • For Reviewers
  • For the Media
  • For Librarians
  • For Advertisers
  • Alerts
  • RSS
  • FAQ
  • Permissions
  • Journal Announcements

Authors

  • Getting Started
  • Submit a Manuscript
  • Author Warranty
  • Ethics
  • Contact Us
  • ASM Author Center

Follow #MRAJournal

@ASMicrobiology

       

ASM Journals

ASM journals are the most prominent publications in the field, delivering up-to-date and authoritative coverage of both basic and clinical microbiology.

About ASM | Contact Us | Press Room

 

ASM is a member of

Scientific Society Publisher Alliance

 

American Society for Microbiology
1752 N St. NW
Washington, DC 20036
Phone: (202) 737-3600

Copyright © 2021 American Society for Microbiology | Privacy Policy | Website feedback

Online ISSN: 2576-098X