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Viruses

Recovery of Five Complete Influenza A(H1N1)pdm09 Genome Sequences from the 2015 Influenza Outbreak in India by Metagenomic Sequencing

Paban Kumar Dash, Chitra Pattabiraman, Kundan Tandel, Shashi Sharma, Jyoti S. Kumar, Shilpa Siddappa, Malali Gowda, Sudhir Krishna, Manmohan Parida
Paban Kumar Dash
aDivision of Virology, Defence Research and Development Establishment (DRDE), Gwalior, India
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Chitra Pattabiraman
bNational Centre for Biological Sciences, TIFR, Bangalore, India
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Kundan Tandel
aDivision of Virology, Defence Research and Development Establishment (DRDE), Gwalior, India
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Shashi Sharma
aDivision of Virology, Defence Research and Development Establishment (DRDE), Gwalior, India
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Jyoti S. Kumar
aDivision of Virology, Defence Research and Development Establishment (DRDE), Gwalior, India
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Shilpa Siddappa
cNext-Generation Sequencing Facility, Centre for Cellular and Molecular Platforms, Bangalore, India
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Malali Gowda
cNext-Generation Sequencing Facility, Centre for Cellular and Molecular Platforms, Bangalore, India
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Sudhir Krishna
bNational Centre for Biological Sciences, TIFR, Bangalore, India
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Manmohan Parida
aDivision of Virology, Defence Research and Development Establishment (DRDE), Gwalior, India
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DOI: 10.1128/genomeA.00511-18
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ABSTRACT

Five complete (H1N1)pdm09 viral sequences were recovered from hospitalized individuals during the 2015 influenza outbreak by metagenomic sequencing. Four of the genomes are from oropharyngeal swabs, and one is from an isolate. All five sequences belong to an emerging 6B clade. Studying them further is critical for outbreak preparedness.

  • Copyright © 2018 Dash et al.

This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

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Recovery of Five Complete Influenza A(H1N1)pdm09 Genome Sequences from the 2015 Influenza Outbreak in India by Metagenomic Sequencing
Paban Kumar Dash, Chitra Pattabiraman, Kundan Tandel, Shashi Sharma, Jyoti S. Kumar, Shilpa Siddappa, Malali Gowda, Sudhir Krishna, Manmohan Parida
Genome Announcements Jun 2018, 6 (26) e00511-18; DOI: 10.1128/genomeA.00511-18

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Recovery of Five Complete Influenza A(H1N1)pdm09 Genome Sequences from the 2015 Influenza Outbreak in India by Metagenomic Sequencing
Paban Kumar Dash, Chitra Pattabiraman, Kundan Tandel, Shashi Sharma, Jyoti S. Kumar, Shilpa Siddappa, Malali Gowda, Sudhir Krishna, Manmohan Parida
Genome Announcements Jun 2018, 6 (26) e00511-18; DOI: 10.1128/genomeA.00511-18
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