Article Figures & Data
Figures
- FIG 1
Phylogenetic tree of the genome sequences of SARS-CoV-2/human/KOR/YS006/2020 and SARS-CoV-2/human/KOR/YS008/2020, along with 58 other randomly chosen sequences, including 30 sequences of South Korean isolates of SARS-CoV-2 retrieved from Nextstrain (nextstrain.org). Multiple sequence alignments were conducted with MUSCLE v3.8.31 (12), and the phylogenetic tree was constructed using the Molecular Evolutionary Genetics Analysis (MEGA) v7.0 software by the neighbor-joining method with 1,000 bootstrap replicates (13). Shown in parentheses after the strain name and GISAID accession number are the clade to which it belongs and the collection date (month-day) for each strain. The sequences reported in this announcement are shown in bold. The SARS-CoV-2 isolates are presented in seven different colors for the different clades (shown in the key), classified according to GISAID classification. The scale bar represents the number of nucleotide substitutions per site.
Tables
- TABLE 1
Nucleotide and amino acid changes in the YS006 and YS008 strains, in comparison to the reference strain
↵a Reference strain Wuhan/Hu-1/2019 (nucleotides 1 to 29870).
↵b ORF, open reading frame; nsp, nonstructural protein; E, envelope; N, nucleocapsid.
↵c Amino acid changes present in the YS006 and YS008 strains, in comparison to the reference strain.
↵d A nonsynonymous substitution present only in the YS008 strain.
