Amplicon Sequence Collections
Amplicon Sequence CollectionsBacterial Community Sequences of Submerged Aquatic Vegetation in the Potomac RiverHere, we report results from PCR and sequencing of bacterial 16S rRNA genes from leaf and root surfaces from nine submerged aquatic vegetation (SAV) samples comprising five species. Samples were from four sites along the Potomac River.
Amplicon Sequence CollectionsBacterial Diversity of Water and Soil Samples from Dripping Springs in the Organ Mountains (New Mexico), Determined by Using 16S rRNA Gene Amplicon SequencingDripping Springs is located on the western side of New Mexico’s Organ Mountains. This is an initial microbial analysis of the spring water and surrounding microbial mat. Both soil-water and water samples showed a high level of microbial biodiversity consistent with the secluded and pristine nature of the area.
Amplicon Sequence Collections16S rRNA Gene Amplicon Sequencing of Microbiota in Polybutylene Succinate Adipate-Packed Denitrification Reactors Used for Water Treatment of Land-Based Recirculating Aquaculture SystemsInformation on the microbiota in polybutylene succinate adipate (PBSA)-packed denitrification reactors is limited. Here, we provide 439,817 high-quality reads of the 16S rRNA gene sequences of microbiota in PBSA-packed denitrification reactors used for land-based recirculating aquaculture. The predominant microorganisms belonged to the following families: Nocardiaceae, Chitinophagaceae, Xanthobacteraceae, ...
Amplicon Sequence Collections16S rRNA Amplicon Sequencing of Sediment Bacterial Communities in an Oyster Farm in Rhode IslandLittle is known about the impact of oyster farming on sediment microbial communities. Here, we use 16S rRNA gene sequencing to identify bacterial communities in 24 sediment samples collected from an oyster farm in Ninigret Pond, RI. A total of 13,147 unique operational taxonomic units (OTUs) were assigned, with Proteobacteria being the dominant phyla across all samples.
Amplicon Sequence CollectionsMicrobial Diversity of the Red Sea Urchin Loxechinus albus during Controlled Farming in Puerto Montt, Chile, Using 16S rRNA Gene Amplicon SequencingLoxechinus albus is a shallow-water sea urchin, and its distribution is related to the cold water of the Southern Hemisphere. Recently, bacterial communities, also called microbiota, in sea urchins have started being explored. In this report, we have characterized the surface, testa, and gonad microbiota using 16S rRNA sequencing.
Amplicon Sequence Collections16S rRNA Gene Amplicon Sequencing of Microbial Communities Involved in Anaerobic Bulking in a Mesophilic Expanded Granular Sludge Bed Reactor Treating Wastewater Discharged from a Japanese-Style Thickened Worcestershire Sauce-Producing FactoryWe analyzed the prokaryotes in bulking and healthy sludge from a mesophilic expanded granular sludge bed reactor treating wastewater with high organic content by 16S rRNA gene amplicon sequencing. We tabulated the microbiota at the phylum level, providing a framework for avoiding sludge bulking.
Amplicon Sequence CollectionsThe Bacterial Community in the Western Region of North Pacific Intermediate WaterThe bacterial composition in North Pacific Intermediate Water (NPIW) was investigated in three different years and compared with that in other seawaters around Japan. The results indicated that bacterial composition was surprisingly stable at the same point in a mesopelagic water mass throughout the years and supported previous physicochemical observations that NPIW is distributed to Kumejima, Japan.
Amplicon Sequence Collections16S rRNA Gene Amplicon Sequence Data from Chicken Cecal Feces from Vietnam and ThailandHere, we report 16S rRNA amplicon sequence data from chicken cecal feces from Vietnam and Thailand. Lachnospiraceae, Ruminococcaceae, and Bacteroidaceae were dominant in cecal feces microbiota.
Amplicon Sequence Collections16S rRNA Gene Amplicon Profiling of Anaerobic Bulking-Associated Prokaryotic Microbiota in a Mesophilic Expanded Granular Sludge Bed Reactor for Beverage Wastewater TreatmentInformation regarding prokaryotic microbiota associated with anaerobic bulking is limited. Here, we provide 16S rRNA gene-based prokaryotic diversity profiles for anaerobic bulking and healthy granular sludge in a mesophilic expanded granular sludge bed (EGSB) reactor. These data were tabulated at the phylum level based on high-quality reads.
Amplicon Sequence CollectionsProkaryotic Community Structures in a Thermophilic Anaerobic Digestion Reactor Converting Poly(l-Lactic Acid) for a Long Period Revealed by 16S rRNA Gene Amplicon SequencingLittle information on poly(l-lactic acid) (PLLA) treatment-associated microbiota in thermophilic anaerobic digestion reactors is available. Here, we provide 16S rRNA gene sequence data on microbiota in a thermophilic anaerobic digestion reactor converting PLLA to methane for 336 days. Data comprising 99,566 total high-quality reads were tabulated at the taxonomic class level.