Amplicon Sequence Collections
Amplicon Sequence CollectionsAmplicon of 16S rRNA Gene Sequencing of Fertilized Volcanic Soils from Southern ChileThe volcanic soils of Chiloé Island, have physical and chemical characteristics that affect their productivity. We report here a 16S rRNA gene analysis that characterizes the predominant microbial communities in volcanic soils of Chiloé either in the presence or absence of fertilization. The major phyla identified were Proteobacteria, Acidobacteria, and Actinobacteria.
- Amplicon Sequence CollectionsResponse to Edaphoclimatic Conditions and Crop Management of the Bacterial Microbiome of Musa acuminata Rhizosphere Profiled by 16S rRNA Gene Amplicon Sequencing
Bacterial rhizospheric microbiomes of Musa acuminata cultivated in farms close to the west and east Mexican coasts and with different climate, soils, and crop management practices, were characterized by 16S rRNA gene amplicon sequencing. Results showed that rhizospheric microbiome composition changed along with seasonal weather but were mostly indifferent to soil type...
Amplicon Sequence CollectionsHigh-Throughput Sequencing Survey of Sunflower SoilPlant rhizobiomes are responsible for major soil processes in the immediate plant environment, but our knowledge of the linkage between below-ground microbiota diversity and plant health is limited. We studied the bacterial and archaeal communities of sunflower rhizosphere organisms by comparing the composition of these communities in bulk soil at three farms in the North West province of South Africa. We evaluated and described a...
Amplicon Sequence Collections16S rRNA Amplicon Sequencing of Microbial Biofilms from Marsberg Copper Mine, GermanyThe 16S rRNA amplicons from biofilms inhabiting rocks near various water bodies of Marsberg Copper Mine (Rhenish Massif, Germany) reveal the diversity of their microbial communities. The abundance of Chloroflexi and Cyanobacteria taxa in the biofilms near leachate streams indicated the selective enrichment of Ktedonobacteria and Oxyphotobacteria members.
Amplicon Sequence CollectionsMicrobial Diversity Analysis of Sediment from Yeosu New Harbor of South Korea Using 16S rRNA Gene Amplicon SequencingThe Yeosu New Harbor in the South Korean benthic environment shows a mesotrophic environment affected by the Tsushima Current and the Seomjin River. Here, we report microbial diversity in sediments of Yeosu New Harbor based on 16S rRNA gene amplicon sequencing. The dominant bacterial phylum was Proteobacteria (relative abundance, 72.5 to 78.1%).
Amplicon Sequence Collections16S rRNA Gene Amplicon Sequencing of Gut Microbiota in Three Species of Deep-Sea Fish in Suruga Bay, JapanWe report here 16S rRNA gene amplicon sequence analysis of the gut microbiota in three species of deep-sea fish collected from Suruga Bay, Japan. Of the three species, two were dominated by the phylum Proteobacteria (genus Photobacterium), while one was dominated by the phyla Spirochaetes (genus Brevinema) and Tenericutes (unclassified Mycoplasmataceae).
Amplicon Sequence CollectionsBacterial Diversity Profiling around the Orca Seamount in the Bransfield Strait, Antarctica, Based on 16S rRNA Gene Amplicon SequencesHydrothermal vent activity is often associated with submarine volcanism. Here, we investigated the presence of microorganisms related to hydrothermal activity in the Orca seamount. Data profiling of the 16S rRNA gene amplicon sequences revealed a diversity pattern dominated mainly by the phyla Proteobacteria, Acidobacteria, Planctomycetes, and Bacteroidetes.
Amplicon Sequence Collections16S rRNA Gene Diversity of Bacterial Endophytes in Parasitic Cuscuta campestris and Its Helianthus annuus HostHere, we report the results of 16S rRNA gene amplicon sequencing of bacterial endophytes from parasitized and unparasitized samples of the common sunflower (Helianthus annuus) and samples of its associated plant parasite field dodder (Cuscuta campestris), collected from one location in Fresno County, California (August 2017).
Amplicon Sequence Collections16S rRNA Gene Amplicon Sequencing Data of Tailing and Nontailing Rhizosphere Soils of Mimosa pudica from a Heavy Metal-Contaminated Ex-Tin Mining Area...The 16S rRNA gene amplicon sequence data from tailing and nontailing rhizosphere soils of Mimosa pudica from a heavy metal-contaminated area are reported here. Diverse bacterial taxa were represented in the results, and the most dominant phyla were Proteobacteria (41.2%), Acidobacteria (17.1%), and Actinobacteria (14.4%).
Amplicon Sequence Collections16S rRNA Gene Diversity in Ancient Gray and Pink Salt from San Simón Salt Mines in Tarija, BoliviaDNA from 250 million-year-old pink and gray salts from mines in Tarija, Bolivia, subjected to 16S rRNA gene amplicon sequencing and analysis provided evidence for similar but distinct prokaryotic communities. The results constitute a snapshot of archaeal and bacterial microorganisms in these remote and ancient salt deposits.